PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023836-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 323aa MW: 35858.1 Da PI: 6.3257 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 255 | 277 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H r+H WALNUT_00023836-RA 255 FECPFCDKVFGSGQALGGHKRSH 277 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.7E-5 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 56 | 219 | 239 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.74E-8 | 219 | 277 | No hit | No description |
Pfam | PF13912 | 4.9E-6 | 219 | 244 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.808 | 219 | 247 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.2E-4 | 250 | 277 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.015 | 255 | 277 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.055 | 255 | 277 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.1E-11 | 255 | 277 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 257 | 277 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MERHRCKLCF RTFANGRALG GHMKAHLTTL PLPPKPLQLV ESHTESASSS SSSSGEEQEE 60 DEQSLRDAEE KALAYGLREN PKKSFRLADP EFSFAVDAGS VVQDRESETE SKNPTRQRSK 120 RNRKPSVAEN QGENLELKKP KLRIPSLVDS PEPLSSVSDT SPEEDVAMCL MMLSRGIWMG 180 NNEEQDQEQG KQVQRSVQVK VQEPEELEEI KIRKVRGKHC CEKCKKRFRS YQALSSHKRI 240 CYRDEAGNDS NERIFECPFC DKVFGSGQAL GGHKRSHLLG SSTAAAATAN AAAASPLKLE 300 STVIDLNLPA PVEEDDFSVV SDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | RQRSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018859922.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2I4HUX4 | 0.0 | A0A2I4HUX4_JUGRE; zinc finger protein ZAT4-like | ||||
STRING | cassava4.1_011850m | 1e-137 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-42 | C2H2-like zinc finger protein |