PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022625-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRF
Protein Properties Length: 475aa    MW: 51810.8 Da    PI: 9.8069
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022625-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.7e-25124167144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+rsrk++e
  WALNUT_00022625-RA 124 DPEPGRCRRTDGKKWRCGKDVVPDQKYCERHMHRGRQRSRKPVE 167
                         79***************************************998 PP
2WRC61.31.5e-19355389236
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr 36 
                          epgrCrRtDGKkWRCsr+v+++ k+C  H+hrg 
  WALNUT_00022625-RA 355 LEPGRCRRTDGKKWRCSRDVVPDRKYCVQHMHRGA 389
                         59*******************************95 PP
3QLQ38.82.9e-145791337
                 QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        +T+ Ql++L  Q  +yK+L a++PvP +Ll++i+k
  WALNUT_00022625-RA 57 LTPVQLHELQGQSFIYKHLEAGLPVPLHLLVPIWK 91
                        8********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.0E-65591IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.6065691IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-95790IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.164124168IPR014977WRC domain
PfamPF088791.0E-20125167IPR014977WRC domain
PROSITE profilePS5166720.499354400IPR014977WRC domain
PfamPF088791.4E-17356390IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MIDEEKSTVE VEEKRKCLAV KEAQPPWIKL GLGIGANSAT AASAQYPVTE HGKPVVLTPV  60
QLHELQGQSF IYKHLEAGLP VPLHLLVPIW KSVASCFGPS IYKLYPSFIG YFNPQGFDYR  120
TMMDPEPGRC RRTDGKKWRC GKDVVPDQKY CERHMHRGRQ RSRKPVEAIE ISSPDSMPSG  180
SGWSNDKLGE SNPNHATSVT MGLQLMTQSS HDLATITRSS STGSKKYVSC DAIATRTPIA  240
AVAATMTSIP ATVAMGTTTT LATVSNFTAN VNQKIEHVSE SKDRSGNDAV YNTTMKSNSK  300
RVISPGLRFS PKSVLQGNIS KIRALLSSDS STSFCDRRVQ ICNSPCFGVQ NGIELEPGRC  360
RRTDGKKWRC SRDVVPDRKY CVQHMHRGAK MRLAASQAIS VPATSGATSH NRASPSLRIN  420
IPKKAKFPSP NTDLSISIQA SPQPMHDEKS ATISSSDTTI TDTSITANEY GHVSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846313.10.0PREDICTED: growth-regulating factor 9-like isoform X2
TrEMBLA0A2I4GQY30.0A0A2I4GQY3_JUGRE; growth-regulating factor 9-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.11e-40growth-regulating factor 9