PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00022625-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 475aa MW: 51810.8 Da PI: 9.8069 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 9.7e-25 | 124 | 167 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+rsrk++e WALNUT_00022625-RA 124 DPEPGRCRRTDGKKWRCGKDVVPDQKYCERHMHRGRQRSRKPVE 167 79***************************************998 PP | |||||||
2 | WRC | 61.3 | 1.5e-19 | 355 | 389 | 2 | 36 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr 36 epgrCrRtDGKkWRCsr+v+++ k+C H+hrg WALNUT_00022625-RA 355 LEPGRCRRTDGKKWRCSRDVVPDRKYCVQHMHRGA 389 59*******************************95 PP | |||||||
3 | QLQ | 38.8 | 2.9e-14 | 57 | 91 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +T+ Ql++L Q +yK+L a++PvP +Ll++i+k WALNUT_00022625-RA 57 LTPVQLHELQGQSFIYKHLEAGLPVPLHLLVPIWK 91 8********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.0E-6 | 55 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.606 | 56 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-9 | 57 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.164 | 124 | 168 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.0E-20 | 125 | 167 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 20.499 | 354 | 400 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-17 | 356 | 390 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MIDEEKSTVE VEEKRKCLAV KEAQPPWIKL GLGIGANSAT AASAQYPVTE HGKPVVLTPV 60 QLHELQGQSF IYKHLEAGLP VPLHLLVPIW KSVASCFGPS IYKLYPSFIG YFNPQGFDYR 120 TMMDPEPGRC RRTDGKKWRC GKDVVPDQKY CERHMHRGRQ RSRKPVEAIE ISSPDSMPSG 180 SGWSNDKLGE SNPNHATSVT MGLQLMTQSS HDLATITRSS STGSKKYVSC DAIATRTPIA 240 AVAATMTSIP ATVAMGTTTT LATVSNFTAN VNQKIEHVSE SKDRSGNDAV YNTTMKSNSK 300 RVISPGLRFS PKSVLQGNIS KIRALLSSDS STSFCDRRVQ ICNSPCFGVQ NGIELEPGRC 360 RRTDGKKWRC SRDVVPDRKY CVQHMHRGAK MRLAASQAIS VPATSGATSH NRASPSLRIN 420 IPKKAKFPSP NTDLSISIQA SPQPMHDEKS ATISSSDTTI TDTSITANEY GHVSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846313.1 | 0.0 | PREDICTED: growth-regulating factor 9-like isoform X2 | ||||
TrEMBL | A0A2I4GQY3 | 0.0 | A0A2I4GQY3_JUGRE; growth-regulating factor 9-like isoform X2 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9228 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45480.1 | 1e-40 | growth-regulating factor 9 |