PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00022226-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 311aa MW: 35003.5 Da PI: 5.759

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022226-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.7	1.3e-29	127	185	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers +p v+++tY++eHnh+ WALNUT_00022226-RA 127 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSPLEPGVFIVTYSSEHNHT 185 79***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-30	112	187	IPR003657	WRKY domain
PROSITE profile	PS50811	32.076	121	187	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-25	124	187	IPR003657	WRKY domain
SMART	SM00774	7.7E-35	126	186	IPR003657	WRKY domain
Pfam	PF03106	3.5E-25	128	184	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSDFGRMEDW DLQAVVRGCI NEARPTIFGN PKSCFAPLSA VEDDLLSFPE ISETATVLDE 60 LDKLYKPLIY PVLQPVPSQT ILASSVSVPK EIKQPEQKPS IKEPRRSRKN QHKRVVQHVT 120 AAEGLCSDMW AWRKYGQKPI KGSPYPRSYY RCSSSKGCSA RKQVERSPLE PGVFIVTYSS 180 EHNHTRPTRR NSLAGSTRSK FPTPKRKNNS PSSSKVLSPT TPLMASIEDE FVQSASLKKE 240 EEQMVQENEN NGTFNMPDMI LDSDIDLFPS LEDFDELTAE PAMDGCFLDQ LLDNFPVPWF 300 VERSTAVSDG H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-19	113	188	6	80	Disease resistance protein RRS1
5w3x_D	7e-19	113	188	6	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811192.1	0.0	PREDICTED: probable WRKY transcription factor 29 isoform X1
TrEMBL	A0A1U6ZIF6	0.0	A0A1U6ZIF6_JUGRE; WRKY transcription factor 29
STRING	XP_009343869.1	9e-94	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6217	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	2e-41	WRKY family protein