PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022070-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 168aa    MW: 18122.2 Da    PI: 4.98
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022070-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.5e-16249355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+G+r ++   +Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  WALNUT_00022070-RA  2 YRGIRCRS--SKWVSEIREPRK---TTRIWLGTFPTPEMAAAAYDVAALALRG 49
                        9***9766..5********843...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.809157IPR001471AP2/ERF domain
SMARTSM003808.0E-28165IPR001471AP2/ERF domain
PfamPF008471.9E-9249IPR001471AP2/ERF domain
CDDcd000181.22E-16257No hitNo description
Gene3DG3DSA:3.30.730.106.4E-26257IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-18257IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MYRGIRCRSS KWVSEIREPR KTTRIWLGTF PTPEMAAAAY DVAALALRGG DAVLNFPGLV  60
GLYPVPASTS PLDIRSAAAA AAALKKPESN GNSGPRLQSR CNNHDNTAHE ASIRSGEEFV  120
DEEAIFGMPN LLVDMAEGML VSPPRINSSD DSPGDHNSDS GENLWSYF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848374.11e-122PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ907e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2I4GWV21e-120A0A2I4GWV2_JUGRE; ethylene-responsive transcription factor ERF027
STRINGPOPTR_0003s12120.12e-62(Populus trichocarpa)
STRINGXP_002509704.13e-62(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-48ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]