PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021286-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 477aa    MW: 54166.3 Da    PI: 6.0243
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021286-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.31.1e-24106207186
            trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                         +Wt+ +v++Li a+ +m+++ +++                +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++++
  WALNUT_00021286-RA 106 KWTDTMVRLLIMAVYYMGDEAGSEGitdptgskkksagllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKV 196
                         7*****************9999764556677788899999**********************************************559** PP

            trihelix  76 sstcpyfdqle 86 
                         +++ ++++ +e
  WALNUT_00021286-RA 197 VENQSLLETME 207
                         *****999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-22104232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEPNGVGGGM FPNIDSGMLG LELPLQQQLP QRQKSPANPQ NLHRHHLQIS VSYPHHETDH  60
NPPQSQQSVK YPYPLVKPKQ AIALSDEDDD NSGDAKRKMS PWQRMKWTDT MVRLLIMAVY  120
YMGDEAGSEG ITDPTGSKKK SAGLLQKKGK WKSVSRAMME KGFYVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTACKVVENQ SLLETMELSP KMKEEVRKLL NSKHLFFREM CAYHSSCGHG  240
VADGAAGGSN RSPEVAAEAS HTQQQQAQQQ QYCFHSSENA GMGGDGSKMV KGESGEEEEE  300
DDDDVGDDSD EDEDEDGVES GSKGLSGHGH EDEDDNDERT WRKRARKVGF PASSQLVQQL  360
SCDVMSMLQD GEKSQWEKKQ WLRTRLIQLE EQQVSYQGQA FELEKQRLKW VKFSGKKERE  420
MERAKLENER RRLENERMAL LLRQKEMELL DLHQQQQQLQ QLQHSSNKRG EPSSVTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836196.10.0PREDICTED: uncharacterized protein LOC109002764
TrEMBLA0A2I4FX200.0A0A2I4FX20_JUGRE; uncharacterized protein LOC109002764
STRINGXP_004303047.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-76sequence-specific DNA binding transcription factors