PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020371-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 823aa MW: 89275.6 Da PI: 6.3847 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.8e-21 | 120 | 175 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k WALNUT_00020371-RA 120 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 175 688999***********************************************999 PP | |||||||
2 | START | 210.4 | 6.5e-66 | 329 | 553 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+a+ +e +Wv+s e++n +e+l++f++ + + +ea+r++g+v+ ++ lve+l+d++ +W e+++ + WALNUT_00020371-RA 329 ELALAAMDELVKMAQTDESLWVRSLegrrEMLNLEEYLRTFTPCIGmkpngFVTEASRETGMVIINSLALVETLMDSN-RWAEMFPcmiaR 418 5899**************************************9988999*9***************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+ds ++ + + +v +++lpSg+++++++ng+s WALNUT_00020371-RA 419 TSTTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDSIRETSAAPTFVNCRRLPSGCVVQDMPNGYS 509 ****************************************************************999************************ PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwveh++++++++h+l+r+l++sg+ +ga++w atlqrqce+ WALNUT_00020371-RA 510 KVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWIATLQRQCEC 553 ******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-20 | 103 | 177 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 112 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 117 | 177 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 118 | 181 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.87E-18 | 119 | 177 | No hit | No description |
Pfam | PF00046 | 2.0E-18 | 120 | 175 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 152 | 175 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.088 | 320 | 556 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.5E-34 | 322 | 553 | No hit | No description |
CDD | cd08875 | 1.76E-127 | 324 | 552 | No hit | No description |
Pfam | PF01852 | 1.0E-57 | 329 | 553 | IPR002913 | START domain |
SMART | SM00234 | 4.6E-51 | 329 | 553 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.33E-23 | 575 | 809 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 823 aa Download sequence Send to blast |
MSFGGFLENT TGGGARVVAD ISYNNSNGNN NHNMPAGALA HPRLVTPPLT KSMFNSSPGL 60 SLGLQPNIDG QADVARMAEN FEVNLGRRSR DEEHESRSGS DNMDGASGDD LDAADNPPRK 120 KRYHRHTPQQ IQELESLFKE CPHPDEKQRL ELSKRLCLET RQVKFWFQNR RTQMKTQLER 180 HENSLLRQEN DKLRAENMSI RDAMRNPICS NCGGPAIIGE ISLEEQHLRI ENARLKDELD 240 RVCALAGKFL GRPISSLANA IGPPLPSSSL ELGVGSNGFA GLSHVATTLP LGPDFGVGIS 300 GVLPVVPPAR PPSSLTGLDR SIERSMFLEL ALAAMDELVK MAQTDESLWV RSLEGRREML 360 NLEEYLRTFT PCIGMKPNGF VTEASRETGM VIINSLALVE TLMDSNRWAE MFPCMIARTS 420 TTDVISSGMG GTRNGALQLM HAELQVLSPL VPVREVNFLR FCKQHAEGVW AVVDVSIDSI 480 RETSAAPTFV NCRRLPSGCV VQDMPNGYSK VTWVEHAEYD ESQVHQLYRP LLSSGMGFGA 540 QRWIATLQRQ CECLAILMSS TVPARDHTAA ITAGGRRSML KLAQRMTDNF CAGVCASTVH 600 KWNKLQAGNV DEDVRVMTRK SVDDPGEPPG IVLSAATSVW LPVSPQKLFD FLRDERLRSE 660 WDILSNGGPM QEMAHIAKGQ DHGNCVSLLR AGAMNANQSS MLILQETCID AAGSLVVYAP 720 VDIPAMHVVM NGGDSAYVAL LPSGFAIVPD GPGSRGPGTA TANGGGGAGP GPHRVSGSLL 780 TVAFQILVNS LPTAKLTVES VETVNNLISC TVQKIKAALQ CES |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018813891.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A2I4E3B1 | 0.0 | A0A2I4E3B1_JUGRE; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
STRING | VIT_15s0048g02000.t01 | 0.0 | (Vitis vinifera) | ||||
STRING | POPTR_0014s07130.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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