PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020170-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 431aa    MW: 47596.1 Da    PI: 8.5995
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020170-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.8e-1367123155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  WALNUT_00020170-RA  67 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 123
                         57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1567132IPR016177DNA-binding domain
PfamPF008476.2E-967123IPR001471AP2/ERF domain
PROSITE profilePS5103218.51868131IPR001471AP2/ERF domain
SMARTSM003805.3E-1968137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-1268132IPR001471AP2/ERF domain
PRINTSPR003674.3E-56980IPR001471AP2/ERF domain
PRINTSPR003674.3E-5113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MASSSSDPGL KSEAGGGGCG GEASEAVVTN DQLLLYRGLK KAKKDRGCTA KERISKMPPC  60
AAGKRSSIYR GVTRHRWTGR YEAHLWDKST WNQNQNKKGK QGAYDDEEAA ARAYDLAALK  120
YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG FSRGISKYRG LSSRWEPFGR  180
MAGSEYFNSM HYGTGDDPAA ESEYLGSFCN ERKFDLTSYI KWWGPNKSRH ADAGTKSSEE  240
TKHAGDIGVE LKTLEWGVQP TEPYQMPRLG VSNEERKHKG SAVSALSILS RSAAYKNLQE  300
IASKKQENSG DNDENEDKNT INKMDYGKAV EKSTTHDVGT GRLGVTLGMS GGLSLQRNVY  360
PSTPFLSAPL LTNYNTVDPL VDPILWTSLV PVLPTGLSRA AEVGYKDRDQ FDLHTLSFGG  420
IGNILFSCTI W
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816361.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-157AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2I4EAD80.0A0A2I4EAD8_JUGRE; AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
STRINGXP_010105336.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-155AP2 family protein