PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020053-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARR-B
Protein Properties Length: 580aa    MW: 65973 Da    PI: 4.806
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020053-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73e-24199252155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  WALNUT_00020053-RA 199 KHRVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                         68*******************.9*******************************8 PP
2Response_reg839e-28191271109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + 
  WALNUT_00020053-RA  19 VLVVDDDPTWLKILEKMLKKCAY-EVTTCGLAREALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKG 107
                         89*********************.***************999999**********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ ++el++
  WALNUT_00020053-RA 108 VQHGACDYLLKPIRMKELRN 127
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-4416152No hitNo description
SuperFamilySSF521721.85E-3516138IPR011006CheY-like superfamily
SMARTSM004481.3E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.23218133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.81E-3120133No hitNo description
SuperFamilySSF466891.27E-16197254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-27197256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-21199252IPR006447Myb domain, plants
PfamPF002491.8E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MENGFSSPRS ESFPAGLRVL VVDDDPTWLK ILEKMLKKCA YEVTTCGLAR EALNLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEI RDIDHHESFE GIRLSINGSE FSDDCIMFSG EDLTSFKKRK  180
DFQNKYDERD YGDLSSTKKH RVVWSVDLHQ KFVKAVNQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLIRLQKE NDLKASFGGI KHSDVPSKDT SGGFGLQSSI HTNQNDVAND  300
RDQFSGSNFY GQDLDAKNNE GDQEEIVSEP RPDSKKPLTA DVPDPQDTRS SQMSFDHSSA  360
SLGSDVNYTE FDCSIPKQYP WSECPEVQSK QEHKLLLQLE DGFSQQPPGV PQHYIEIDQL  420
QSGRDTSSPI KNEPVLVEYK SHHESHISPK ETAIDNFSVQ SKSLIAYHQS FEPSSTAIKS  480
MKPQAVDLSC ITDLESCQRN LISPSDLTFP PFNEDLTVCW LQGDFLNKNF GLPNMEFADY  540
SDPGFIADIP VHLYDTLTSD YECPYDPTEY PIVDQGLFIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17195257163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818748.10.0PREDICTED: two-component response regulator ARR11-like
TrEMBLA0A2I4EH740.0A0A2I4EH74_JUGRE; Two-component response regulator
STRINGXP_008221977.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-127response regulator 11