PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019124-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 347aa    MW: 38058.1 Da    PI: 7.1267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019124-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016151173123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  WALNUT_00019124-RA 151 YECKTCKRTFPSFQALGGHRASH 173
                         99**********99999998887 PP
2zf-C2H212.40.00049234256123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg  F++   L  H+r+H
  WALNUT_00019124-RA 234 HECSVCGAEFTSGQALGGHMRRH 256
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.9E-13150175IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-8150173No hitNo description
SMARTSM003550.11151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325151178IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-8229256No hitNo description
Gene3DG3DSA:3.30.160.600.001232256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.5E-13233258IPR007087Zinc finger, C2H2
SMARTSM003550.012234256IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138234261IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEAQEEVIVM GSKENTHIVK GKRTKRQRPQ SPIPFAMIST TANSPTGEGG GAGTGGGIYG  60
EKNCNIDTIN DDMNTSFSPA TSTELLQDST TEEEEDMANC LILLAQGQTR PETPRQVEVD  120
HGGGGGAFKF NSRRFLEAAA TGTGKAGYYV YECKTCKRTF PSFQALGGHR ASHKKPKAMA  180
AAEERERSSK QFLLSSDDDQ EAQSKKNDLI SSLSLQLSSS SRGLGSNNNR SKVHECSVCG  240
AEFTSGQALG GHMRRHRAPN MGTNTTLSFT SPSLALEPDH HHDQETKRPR QMLSLDLDLN  300
LPAPEDDHRE PKFSFATKQQ QQKQQQQPQQ QQQPLVFSAR TLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837647.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2I4G1710.0A0A2I4G171_JUGRE; zinc finger protein ZAT5-like
STRINGEOY188511e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-71C2H2 family protein