PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018813-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 493aa    MW: 56939.7 Da    PI: 6.8726
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018813-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1834.9e-2667156190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         kfY eYA++vGF vr+ + ++s  +g++  r++ C+k+g++ +++    +e+++r++ r gCka++ vk+ek+gkw+vt++e++HnH+l+
  WALNUT_00018813-RA  67 KFYIEYARRVGFIVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHRGMIGQEKKPRPSAREGCKATILVKMEKSGKWVVTRFEKDHNHPLV 156
                         6******************************************99999****************************************96 PP

2FAR1812.1e-25315405190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++   ++++    + + tr gC a+l++ +++ +kw+vtk+++eHnH+l
  WALNUT_00018813-RA 315 EFYIAYGRRTGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYVYRKDR-VlpPPPITREGCAAMLRLALRDGEKWVVTKFVKEHNHTL 404
                         6******************************************99883333.234899*******************************99 PP

                FAR1  90 a 90 
                          
  WALNUT_00018813-RA 405 L 405
                         6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-2467156IPR004330FAR1 DNA binding domain
PfamPF031012.0E-22315405IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MALIFFTSYI STTYLRIYLW KFVAVDLEKG VEAVNNSLVV NTGSLEGGAV PEPYVGMEFD  60
SEDDARKFYI EYARRVGFIV RIMQRRRSGI DGRTLARRLG CNKQGFSPNH RGMIGQEKKP  120
RPSAREGCKA TILVKMEKSG KWVVTRFEKD HNHPLVVTAN GFSTAGDKDK KIEELTVELE  180
RQELLCAAYR EKLLCFMNNV EEQTEELSSK IQVIVDNVRK VESELHDGLA ASINLRIMEN  240
HCGQAFDSDE SEKCLQIESY VEHEFGDDDL SKNADLCMGK VDKIIEQPHE SSSLIDNVLE  300
PYVGMEFNSR DDAREFYIAY GRRTGFTVRI HHNRRSRINN VVIGQDFVCS KEGFREKKYV  360
YRKDRVLPPP PITREGCAAM LRLALRDGEK WVVTKFVKEH NHTLLSPSKV PWRGSGKNMI  420
SEDEKDQRIR ELTLELSNER QRCKRLCAAY QEQLHMVLKY IEEHTDHMER RVQDIVQNVR  480
EIENEQQGDS TFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439444RQRCKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3187241e-130JQ318724.1 Morella rubra microsatellite ZJU029 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301085.10.0uncharacterized protein LOC110429388
TrEMBLA0A2I4EFP30.0A0A2I4EFP3_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_002527269.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.11e-69FAR1 family protein