PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00018813-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | FAR1 | ||||||||
Protein Properties | Length: 493aa MW: 56939.7 Da PI: 6.8726 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83 | 4.9e-26 | 67 | 156 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ +++ +e+++r++ r gCka++ vk+ek+gkw+vt++e++HnH+l+ WALNUT_00018813-RA 67 KFYIEYARRVGFIVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHRGMIGQEKKPRPSAREGCKATILVKMEKSGKWVVTRFEKDHNHPLV 156 6******************************************99999****************************************96 PP | |||||||
2 | FAR1 | 81 | 2.1e-25 | 315 | 405 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ +kw+vtk+++eHnH+l WALNUT_00018813-RA 315 EFYIAYGRRTGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYVYRKDR-VlpPPPITREGCAAMLRLALRDGEKWVVTKFVKEHNHTL 404 6******************************************99883333.234899*******************************99 PP FAR1 90 a 90 WALNUT_00018813-RA 405 L 405 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-24 | 67 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.0E-22 | 315 | 405 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MALIFFTSYI STTYLRIYLW KFVAVDLEKG VEAVNNSLVV NTGSLEGGAV PEPYVGMEFD 60 SEDDARKFYI EYARRVGFIV RIMQRRRSGI DGRTLARRLG CNKQGFSPNH RGMIGQEKKP 120 RPSAREGCKA TILVKMEKSG KWVVTRFEKD HNHPLVVTAN GFSTAGDKDK KIEELTVELE 180 RQELLCAAYR EKLLCFMNNV EEQTEELSSK IQVIVDNVRK VESELHDGLA ASINLRIMEN 240 HCGQAFDSDE SEKCLQIESY VEHEFGDDDL SKNADLCMGK VDKIIEQPHE SSSLIDNVLE 300 PYVGMEFNSR DDAREFYIAY GRRTGFTVRI HHNRRSRINN VVIGQDFVCS KEGFREKKYV 360 YRKDRVLPPP PITREGCAAM LRLALRDGEK WVVTKFVKEH NHTLLSPSKV PWRGSGKNMI 420 SEDEKDQRIR ELTLELSNER QRCKRLCAAY QEQLHMVLKY IEEHTDHMER RVQDIVQNVR 480 EIENEQQGDS TFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 439 | 444 | RQRCKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ318724 | 1e-130 | JQ318724.1 Morella rubra microsatellite ZJU029 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021301085.1 | 0.0 | uncharacterized protein LOC110429388 | ||||
TrEMBL | A0A2I4EFP3 | 0.0 | A0A2I4EFP3_JUGRE; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_002527269.1 | 1e-142 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-69 | FAR1 family protein |