PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00018812-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 434aa MW: 49757.8 Da PI: 7.9681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018812-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.4e-24	44	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+ +GF +r+++ ++s +++i++r+f C+k+g+ + ++++++ ++++++ gCka++ v+ +k+gkw vt+++++H H+l+ WALNUT_00018812-RA 44 EFYDDYARCIGFVMRVDECRRSGVDKRIISRRFSCNKQGFYVKARDESRRIQKPQPSMGEGCKAMMLVEVHKSGKWIVTSIVKDHGHPLV 133 6**************************************9999999999***********************************96 PP
2	FAR1	94.7	1.1e-29	266	353	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + k+ +++r++ra tr gCka+++vkkek+gkw vt++++eHnH+l+ WALNUT_00018812-RA 266 FYDAYATRLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPKR-SENRKPRAITREGCKAMIVVKKEKTGKWLVTRFVKEHNHPLV 353 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-22	44	133	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.3E-28	266	353	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MMNLGMGVDS VGSSDEGDLV VCGKGPAVEP YVGMEFESEE AAKEFYDDYA RCIGFVMRVD 60 ECRRSGVDKR IISRRFSCNK QGFYVKARDE SRRIQKPQPS MGEGCKAMML VEVHKSGKWI 120 VTSIVKDHGH PLVVSGHPSR GSLDSRERRI QELTMELQRQ DRLCELYREL LLSFLENVEE 180 QTELLSRKVE VVVNDVRELE SRDRSPKAFT KGAQCFLAVD EHPSMSEDGD MIESSNGKEL 240 LTTDGSSDIE PYVGMEFESE EAAKVFYDAY ATRLGFIMRV DAFRRSMRDG KVVWRRLVCN 300 KEGFRKLRPK RSENRKPRAI TREGCKAMIV VKKEKTGKWL VTRFVKEHNH PLVATPANGR 360 RSVLLSQTPD EKDVKIRELT AELQRERKRS AAFQEQLDMV LRDMEDHSHH LSRNIDDIVQ 420 SVREIESKRL GTLT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MMNLGMGVDS VGSSDEGDLV VCGKGPAVEP YVGMEFESEE AAKEFYDDYA RCIGFVMRVD  60
ECRRSGVDKR IISRRFSCNK QGFYVKARDE SRRIQKPQPS MGEGCKAMML VEVHKSGKWI  120
VTSIVKDHGH PLVVSGHPSR GSLDSRERRI QELTMELQRQ DRLCELYREL LLSFLENVEE  180
QTELLSRKVE VVVNDVRELE SRDRSPKAFT KGAQCFLAVD EHPSMSEDGD MIESSNGKEL  240
LTTDGSSDIE PYVGMEFESE EAAKVFYDAY ATRLGFIMRV DAFRRSMRDG KVVWRRLVCN  300
KEGFRKLRPK RSENRKPRAI TREGCKAMIV VKKEKTGKWL VTRFVKEHNH PLVATPANGR  360
RSVLLSQTPD EKDVKIRELT AELQRERKRS AAFQEQLDMV LRDMEDHSHH LSRNIDDIVQ  420
SVREIESKRL GTLT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018818223.1	1e-155	PREDICTED: protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A498IX10	0.0	A0A498IX10_MALDO; Uncharacterized protein
STRING	EMJ01654	1e-134	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-94	FAR1 family protein