PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00018446-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 514aa MW: 56592.5 Da PI: 9.7518 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H WALNUT_00018446-RA 87 FVCEICKKGFQRDQNLQLHRRGH 109 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ WALNUT_00018446-RA 163 WKCEKCSKKYAVQSDWKAHSKTC 185 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 86 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.26E-6 | 86 | 109 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 87 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.039 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 96 | 128 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 151 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.26E-6 | 158 | 183 | No hit | No description |
SMART | SM00355 | 140 | 163 | 183 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MSNTTTGGDG GSFTSGNTAG DEVQQQRDHQ LLTADQYFNR SNINGSSTKQ QQPPSSLKKK 60 RNLPGNPDPT AEVISLSPTT LMATNRFVCE ICKKGFQRDQ NLQLHRRGHN LPWKLKQRTS 120 TEIRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA 180 HSKTCGTREY KCDCGTIFSR RDSFITHRAF CDALSEENNK AKQGLLSNMG PNLQGQISEL 240 MPSLPINNTN PSSGTFGFDQ SDIKAVPLAL PQELMSFPTK PALNMTGSHL YTSPRSINSS 300 SSPISLQPKK TSSTIFEGNG HQLPHVSAHM SATALLQKAA QMGATVSNNG MNSPLMQNNF 360 VTSMAPPSLG AMQPQNHDQS FVNQFIQKGQ QQETSSQFIN AIGMLNNLGM TNMGMLHGLA 420 DDENSALLKN VTHDSSKSTN VLHGANSNGR SGDMMTVDFL GLGGGSRRTG NFYEQQQQKQ 480 QEMAGFDGNG QRFQGLSHFQ QQAQALMEKH MWEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-35 | 159 | 228 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 4e-35 | 159 | 228 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845904.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Refseq | XP_018845905.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-112 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2I4GPT5 | 0.0 | A0A2I4GPT5_JUGRE; protein indeterminate-domain 2-like | ||||
STRING | EOY11464 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 4e-97 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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