PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00017068-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 27873.1 Da PI: 4.7275 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 8e-20 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le+lFe+++ + +++ +LA++lgL+ rqV +WFqN+Ra++k WALNUT_00017068-RA 35 KNKRRFSDEQIRSLETLFESESRLEPRKKMQLATELGLQPRQVAIWFQNKRARWK 89 67789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.3 | 9.7e-39 | 36 | 127 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +krr+s+eq+++LE+ Fe+e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE++y+ L+++y++l++ ++L+ke+++L ++l+ WALNUT_00017068-RA 36 NKRRFSDEQIRSLETLFESESRLEPRKKMQLATELGLQPRQVAIWFQNKRARWKSKQLEREYNILRANYNNLVSMFDALKKEKQALLQKLN 126 79************************************************************************************99997 PP HD-ZIP_I/II 93 e 93 + WALNUT_00017068-RA 127 D 127 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.08E-19 | 18 | 93 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 24 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-16 | 34 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.85E-14 | 35 | 92 | No hit | No description |
Pfam | PF00046 | 3.4E-17 | 35 | 89 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.0E-5 | 62 | 71 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 71 | 87 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-13 | 91 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MSIRLPIDHA EYAAAAEPFP CMDSFSTTMR KKNSKNKRRF SDEQIRSLET LFESESRLEP 60 RKKMQLATEL GLQPRQVAIW FQNKRARWKS KQLEREYNIL RANYNNLVSM FDALKKEKQA 120 LLQKLNDLMQ RPQEERQCCR QEPAANGIRG ESDNGDTATC EYEMKPSLST ERSEHGLGVL 180 TDEDACTKPE YFELEDEPTL LNIVEPTDST LASPEDWGSL NSESLFDQSN SNSQWWDFWS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018805268.1 | 1e-172 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 2e-66 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2I4DDP3 | 1e-170 | A0A2I4DDP3_JUGRE; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | POPTR_0002s17680.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-52 | homeobox 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|