PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016967-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 588aa MW: 64784.5 Da PI: 9.2452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016967-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	114	136	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H WALNUT_00016967-RA 114 FVCEICNKGFQRDQNLQLHRRGH 136 89*******************88 PP
2	zf-C2H2	14.6	9.5e-05	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++++ WALNUT_00016967-RA 190 WKCDKCSKKYAVQSDWKAHQKSC 212 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.82E-8	113	136	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	113	136	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	114	136	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	114	136	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	116	136	IPR007087	Zinc finger, C2H2
SMART	SM00355	70	155	185	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.7E-5	178	211	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.82E-8	185	210	No hit	No description
SMART	SM00355	94	190	210	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MSNITGDEGS FSSGNTGDQE NQLQQNFHGS SSGRPSGVSN SNSSTSQQQQ QQQQQQPVKK 60 KRNLPGTPGK FNHPRILVMF FLLKHLAIEL AGSLDPNAEV IALSPTTLMA TNRFVCEICN 120 KGFQRDQNLQ LHRRGHNLPW KLKQRTSTEI RKRVYICPEP TCVHNKPARA LGDLTGIKKH 180 YSRKHGEKKW KCDKCSKKYA VQSDWKAHQK SCGTREYKCD CGTIFSRRDS FITHRAFCDA 240 LAEENNKVNQ GLMNNVGSNF QTQMQELMSS MPMNTTTNAS IGTSEFNNLD PKNPLNSLPQ 300 EPVPMPFKPM NMTGGMFSTS SGTLFGGPRT SSSSSLQLSS NSSSGLNYLH DSKNGCKISG 360 SAHMSATALL QKAAQMGATA SNTINSPMMQ KSFVSSMAGP DQLSSIRPPY TGNVQQLNSS 420 YDHFRPQPDH QSNMAGINGG EFTNQLLQKG PHEDISQIFD AIGGSTIQNM VFSQMLMGGD 480 QNQGFIKNKE QEESGSSSLI HGRTTVAPDR NTTVPSSFGG SAARNSMTLD LILGIGGSRP 540 VISWQEQQQQ QQQQQQQQRL ELEEMIEPAK VANYDTFPAI NPTWGFRD

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MSNITGDEGS FSSGNTGDQE NQLQQNFHGS SSGRPSGVSN SNSSTSQQQQ QQQQQQPVKK  60
KRNLPGTPGK FNHPRILVMF FLLKHLAIEL AGSLDPNAEV IALSPTTLMA TNRFVCEICN  120
KGFQRDQNLQ LHRRGHNLPW KLKQRTSTEI RKRVYICPEP TCVHNKPARA LGDLTGIKKH  180
YSRKHGEKKW KCDKCSKKYA VQSDWKAHQK SCGTREYKCD CGTIFSRRDS FITHRAFCDA  240
LAEENNKVNQ GLMNNVGSNF QTQMQELMSS MPMNTTTNAS IGTSEFNNLD PKNPLNSLPQ  300
EPVPMPFKPM NMTGGMFSTS SGTLFGGPRT SSSSSLQLSS NSSSGLNYLH DSKNGCKISG  360
SAHMSATALL QKAAQMGATA SNTINSPMMQ KSFVSSMAGP DQLSSIRPPY TGNVQQLNSS  420
YDHFRPQPDH QSNMAGINGG EFTNQLLQKG PHEDISQIFD AIGGSTIQNM VFSQMLMGGD  480
QNQGFIKNKE QEESGSSSLI HGRTTVAPDR NTTVPSSFGG SAARNSMTLD LILGIGGSRP  540
VISWQEQQQQ QQQQQQQQRL ELEEMIEPAK VANYDTFPAI NPTWGFRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	186	255	3	72	Zinc finger protein JACKDAW
5b3h_F	5e-34	186	255	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835460.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-104	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2I4FUY8	0.0	A0A2I4FUY8_JUGRE; protein indeterminate-domain 2-like
STRING	POPTR_0002s20950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	9e-94	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]