PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015547-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bZIP

Protein Properties

Length: 407aa MW: 43851.7 Da PI: 6.4593

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015547-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.7	1.2e-08	217	258	12	53
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 NR +A rs +RK +i eLe+kv++L++e ++L +l + WALNUT_00015547-RA 217 ANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQ 258 6*********************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-11	209	270	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.9E-7	214	258	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.41E-22	214	260	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-7	214	264	No hit	No description
SuperFamily	SSF57959	2.46E-9	214	261	No hit	No description
PROSITE profile	PS50217	9.289	214	271	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MSSTPSNGLD EGITPMSMSA QTQDPPSKPI PSSNPIPTHN NAAPPPPPPP PQTASETFGN 60 MRAGTHHRRA HSEVSFRLPE DMADLSPSDP VNGGGGGGGG SSTASLEEMG SEDDLFSTYI 120 DVDKLGTDQS GGEGNGGERS GNRTRHRHSS SVDGSSTTTS SAGVFGEIME AKKAMPPDKL 180 AELWSLDPKR AKRPLSLSLT HTHIHTDVVF DVCRILANRQ SAARSKERKA RYILELERKV 240 QTLQTEATTL SAQLTLFQRD TTGLSTENTE LKLRLQAMEQ QAQLRDALNE ALKKEVERLK 300 VVTGELMSPS ESFNLGMHQM PYTPSTFFPI PQQPGAAGHQ NMQFPFNHPQ SSMSTHQLHQ 360 SNSHPLSEMM QNDPLGRLQG LDISGKGPSL VKSEGPSLSV SGSNSTF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MSSTPSNGLD EGITPMSMSA QTQDPPSKPI PSSNPIPTHN NAAPPPPPPP PQTASETFGN  60
MRAGTHHRRA HSEVSFRLPE DMADLSPSDP VNGGGGGGGG SSTASLEEMG SEDDLFSTYI  120
DVDKLGTDQS GGEGNGGERS GNRTRHRHSS SVDGSSTTTS SAGVFGEIME AKKAMPPDKL  180
AELWSLDPKR AKRPLSLSLT HTHIHTDVVF DVCRILANRQ SAARSKERKA RYILELERKV  240
QTLQTEATTL SAQLTLFQRD TTGLSTENTE LKLRLQAMEQ QAQLRDALNE ALKKEVERLK  300
VVTGELMSPS ESFNLGMHQM PYTPSTFFPI PQQPGAAGHQ NMQFPFNHPQ SSMSTHQLHQ  360
SNSHPLSEMM QNDPLGRLQG LDISGKGPSL VKSEGPSLSV SGSNSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835707.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	1e-101	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2I4FVN5	0.0	A0A2I4FVN5_JUGRE; transcription factor RF2b-like
STRING	XP_007142045.1	1e-164	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-87	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]