PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015312-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 170aa    MW: 18606.9 Da    PI: 9.5004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015312-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-172574255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  WALNUT_00015312-RA 25 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 74
                        8******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-262483No hitNo description
PfamPF008474.7E-112574IPR001471AP2/ERF domain
SMARTSM003804.4E-372588IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212582IPR016177DNA-binding domain
PROSITE profilePS5103222.3132582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-302583IPR001471AP2/ERF domain
PRINTSPR003673.3E-112637IPR001471AP2/ERF domain
PRINTSPR003673.3E-116484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEGGVGGERG EARRKRGVVE MCEKRYKGIR MRKWGKWVAE IREPNKRSRI WLGSYSTPVA  60
AARAYDTAVF YLRGPSARLN FPEFLAPGEA LGSGDLSAAS IRKKATEVGA QVDALETALH  120
HRLHHEHASA AAAAAVAATN KFNSCGGFVE RVDLNKVPDP DDSDGDWERN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-152489470ATERF1
3gcc_A4e-152489470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824463.11e-122PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ9FH942e-60ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2I4EYI91e-121A0A2I4EYI9_JUGRE; ethylene-responsive transcription factor ERF010-like
STRINGXP_004511898.15e-65(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.14e-55DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]