PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015049-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 409aa MW: 45046.3 Da PI: 7.1898 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 56 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g WALNUT_00015049-RA 56 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 105 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 56 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-33 | 56 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 56 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-11 | 56 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 56 | 113 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.65E-30 | 56 | 112 | No hit | No description |
PRINTS | PR00367 | 2.4E-9 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MDEEFRRLNA LTHTPEPISD LHKKCNPTAT TTSMAASATT TTTNKRSLRE ASGTMRYRGV 60 RRRPWGRYAA EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGLKART NFVYPTPPPM 120 SATDHLLPPF NYPKQSPPSI KTPHGRQFGS APGWSPLSNP RDTDSLAGSA PQRHSSLNML 180 LLRDLLNSST NPSLVSSPQA LDDHFPYING SSSSTSAFSG CSLLNPSCNS DVADTYVGPS 240 SMSIPLIDNN LSYNTTGVSN RVTTPRIDDS EFFPTESSDS GLLEAVIHRF FPKPSSKKYD 300 CPKTQTCTVE TIPPQIDHGV SFPQSLDAMR KGLKNENFSY SFDQYQGVPQ PFENLNGIKT 360 EALGPRPTMP FGYEMPAVNL QVAGTESMMD DFLQYPELFS AFAARVQNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-20 | 56 | 112 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018818994.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A2I4EHX6 | 0.0 | A0A2I4EHX6_JUGRE; ethylene-responsive transcription factor ESR2-like | ||||
STRING | EOY00642 | 1e-106 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-14 | DORNROSCHEN-like |