PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014827-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 322aa    MW: 36365.9 Da    PI: 4.7753
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014827-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-082652992155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  WALNUT_00014827-RA 265 KWPYPTEVDKVALAELTGLDQKQINNWFINQRKRH 299
                         569*****************************885 PP
2ELK32.12.5e-11219240122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK+ Llr Ysgy++sLk+EFs
  WALNUT_00014827-RA 219 ELKDKLLRQYSGYISSLKHEFS 240
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.7E-1980124IPR005540KNOX1
PfamPF037902.2E-2083123IPR005540KNOX1
SMARTSM012567.7E-27131182IPR005541KNOX2
PfamPF037913.8E-25135181IPR005541KNOX2
PfamPF037893.3E-9219240IPR005539ELK domain
PROSITE profilePS5121310.388219239IPR005539ELK domain
SMARTSM011886.0E-7219240IPR005539ELK domain
PROSITE profilePS5007112.195239302IPR001356Homeobox domain
SuperFamilySSF466896.84E-20240316IPR009057Homeodomain-like
SMARTSM003899.9E-13241306IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-27244303IPR009057Homeodomain-like
CDDcd000862.04E-12251303No hitNo description
PfamPF059205.7E-16259298IPR008422Homeobox KN domain
PROSITE patternPS000270277300IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDELYGLHST TTDYSVQPLM DSYFLTNYQS FPSPVAGFGD RMPVFGPDRL LSGSASSAVS  60
DAASMVAEIQ RGVSDEEVSG ATRAKIVSHP LYPKLVQAYI DCQKVGAPPE IADVFDEIRK  120
ESDLCYRAPV ASTRLGADPE LDQFMETYCD VLAKYKSDLE RPFDEATSFL NDIETQLNTL  180
CNGASRSCVY EEVGGSLDED VSGGRGVVEE CQPTHNDHEL KDKLLRQYSG YISSLKHEFS  240
KKKKKGKLPK EARQILLDWW NIHYKWPYPT EVDKVALAEL TGLDQKQINN WFINQRKRHW  300
KPSENMQFAV MDSLYGPIFM ND
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837747.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-116KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2I4G1H10.0A0A2I4G1H1_JUGRE; homeobox protein knotted-1-like 6
STRINGVIT_17s0000g08710.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-107KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]