PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014765-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 444aa MW: 50550 Da PI: 6.8764 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.7e-19 | 188 | 234 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd ll+++v+q+G + W+ Ia++++ g+ +kqc++rw+++l WALNUT_00014765-RA 188 KGQWTTEEDRLLIELVQQYGVRKWSHIAQMLP-GKIGKQCRERWHNHL 234 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 8.1e-18 | 240 | 282 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+ WALNUT_00014765-RA 240 KDAWSEEEDKVLIHAHAEIGNR-WAEIAKRLP-GRTENSIKNHWN 282 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.736 | 183 | 238 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.73E-31 | 185 | 281 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-18 | 187 | 236 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-28 | 189 | 242 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.00E-16 | 191 | 234 | No hit | No description |
Pfam | PF13921 | 1.6E-19 | 191 | 249 | No hit | No description |
PROSITE profile | PS51294 | 21.824 | 239 | 289 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-17 | 239 | 287 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-13 | 242 | 285 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 243 | 287 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MELETKLREN LASQALLLSD NHLKPYMKDE FSFGTPSKGF LQDFQSLNRF HTKGSSSNPS 60 FGVQTECYGS LINNFTYGCS TDFDDIHNYC KPFADSGGNG HVMDNFHSGG YLNIPQRNPP 120 YDTMGTDQGY MIFTTWQDIK PINFVVPDEV SCITAENGYN KKVGMNKNIA LPETMRAYRG 180 PRKCNVAKGQ WTTEEDRLLI ELVQQYGVRK WSHIAQMLPG KIGKQCRERW HNHLRPDIKK 240 DAWSEEEDKV LIHAHAEIGN RWAEIAKRLP GRTENSIKNH WNATKRRQYS KRKCRSKYPR 300 ASLLQEYIKS LNLDSNTAKN WRKPSASNAT TTNDTTLKAP VLQPELSSDN LDYDFCFDEN 360 MCQEGCSIDS LLDANTPCAP VVDVKDFDGK MPCAPVFDDN DFDMGIPALD MSPVIECESK 420 KGLDLVETIS QVNEVKRSYF MKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-46 | 188 | 288 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-46 | 188 | 288 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-46 | 188 | 288 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821250.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 9e-91 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A2I4EPB9 | 0.0 | A0A2I4EPB9_JUGRE; transcription factor MYB98-like | ||||
STRING | XP_008239795.1 | 1e-157 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-92 | myb domain protein 98 |
Publications ? help Back to Top | |||
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