PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014633-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 437aa    MW: 48396.2 Da    PI: 7.131
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014633-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.5e-10152193445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  WALNUT_00014633-RA 152 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 193
                         6889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.3E-8143196No hitNo description
SMARTSM003384.9E-8149212IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415151195IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7153196No hitNo description
PfamPF001707.2E-7153193IPR004827Basic-leucine zipper domain
CDDcd147083.41E-22153205No hitNo description
PROSITE patternPS000360156171IPR004827Basic-leucine zipper domain
PfamPF141441.2E-20235293IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MLFSCTEGNA IHSFRVSDFG AFEQSIGFRL EDAVDLTGNT VHSSTKVSGQ VVASNPLHIG  60
TFDKLPSSVD INSSAFRVER QRLPLEKGQA SNLISISSGH IENWEESAMA DASPRTDIST  120
DVDTDDKNNR FDRVIANMAS DSSDRSKDKT DQKTLRRLAQ NREAARKSRL RKKAYVQQLE  180
SSRLKLTQLE QELQRARQQG IFISSSGDQA HSMSGNGAMA FDVEYARWLE EQNRQINELR  240
SAVNSHASDA ELRIIVDNIL AHYDEIFRLK GIAAKADVFH LLSGMWKTPA ERLKTACSGL  300
SLSILNLLAN HLEPLTEQQL VGINNLQQSS QQAEDALSQG MEALQQSLAE TLSSGSLGSS  360
GSSGNVANYM GQMAMAMGKL GTLEGFIRQA DNLRQQTLQQ MHRILTTRQS ARALLAIHDY  420
FSRLRALSSL WLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849408.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_018849409.10.0PREDICTED: transcription factor TGA2-like isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A2I4GZU50.0A0A2I4GZU5_JUGRE; transcription factor TGA2-like isoform X2
STRINGVIT_13s0084g00660.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-139TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]