PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013217-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 305aa MW: 34463.6 Da PI: 5.2189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013217-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.8e-16	30	121	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + s++p+f++l+ WALNUT_00013217-RA 30 CWSEDATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSDGTLASSWPFFERLD 120 7**************************************99999**********************99998888889****98 PP trihelix 87 a 87 a WALNUT_00013217-RA 121 A 121 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-26	28	122	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGDLTDTLSP PSTTPPAAAH SRPLPVREDC WSEDATSTLV DAWGRRYLEL NRGNLRQKDW 60 QDVADAVNAL HGHTKKTHRT DVQCKNRIDT IKKKYKIEKA RVSSSDGTLA SSWPFFERLD 120 ALIGSNVSVK KPPPQPSPSL SPSPPVAVPL YNKKMAPSPS TALVVLPQKR TASAMDEGFS 180 RRNYSAMAAA AAAAASAEDD VEDEDEEEEE EEERESEELE EREGMRRLAR AIETFGEVYE 240 RVEREKLMQM VELEKQRMQF AKDLEVQRMN MFMDTQVQLE KIKRGKRSRS NGTGNLSSFY 300 DFFSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830505.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A2I4FFS5	0.0	A0A2I4FFS5_JUGRE; trihelix transcription factor ASIL1-like
STRING	EOY27995	1e-125	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-40	sequence-specific DNA binding transcription factors