PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00011890-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 346aa MW: 38462.2 Da PI: 9.0389 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 9.2e-18 | 183 | 237 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k WALNUT_00011890-RA 183 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 237 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.9 | 8.8e-41 | 183 | 273 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l WALNUT_00011890-RA 183 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTQENRRLQKELQELR-AL 272 69*************************************************************************************9.55 PP HD-ZIP_I/II 92 k 92 k WALNUT_00011890-RA 273 K 273 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.9E-8 | 74 | 146 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 167 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.74E-18 | 174 | 240 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 179 | 239 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-16 | 181 | 243 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-15 | 183 | 240 | No hit | No description |
Pfam | PF00046 | 2.9E-15 | 183 | 237 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 214 | 237 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.8E-11 | 239 | 273 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.8E-25 | 239 | 282 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MELALSLGDA PKPFAFLDKT TKMSNSGTTL GFCMGVGSGF SGRSDEKRDT REIGDRREVI 60 RGEGDKKISS DPPVQLDLLP FSPVPRSQPP AQLRFPWLTD NLVSEPGSSD GMGRGLDVNR 120 FPMAIAMDEV DDGADLSSPN STVSSFQMDF SVRNGGRTKR DLDVETERAS SRASDDDENG 180 STRKKLRLSK EQSAFLEESF KEHSTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ 240 TEVDCEYLKR CCETLTQENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATTT 300 TSSNATGTNT TTTTTTTKNS AAALSLSKGR VYQVQPHMHH AQKPTS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 181 | 187 | TRKKLRL |
2 | 231 | 239 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018848896.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11 isoform X1 | ||||
Swissprot | P46665 | 1e-103 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A2I4GYB0 | 0.0 | A0A2I4GYB0_JUGRE; homeobox-leucine zipper protein HOX11 isoform X1 | ||||
STRING | EOY09524 | 1e-168 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 7e-89 | homeobox from Arabidopsis thaliana |