PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011636-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRF
Protein Properties Length: 335aa    MW: 37646 Da    PI: 8.8477
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011636-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.7e-2576119144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  WALNUT_00011636-RA  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 119
                         79***************************************998 PP
2QLQ55.91.3e-191041132
                 QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLl 32
                        s+FT +Q+q+L++Q+l++Ky++++ P+Pp+Ll
  WALNUT_00011636-RA 10 SPFTSTQWQELEHQALIFKYMVSGIPIPPDLL 41
                        89*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-101046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-141142IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.3991146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32576120IPR014977WRC domain
PfamPF088793.0E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMSASARNRS PFTSTQWQEL EHQALIFKYM VSGIPIPPDL LYGIKRSLNS SIPSGLFPHC  60
PIAWGCFEMG IGRKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEV  120
TSTATTTTNL SPPIASTNRN LTTNTSPIPT TSSFCVSPLP SSVSSEIHPH PHPYHESTLY  180
PLLYSHSSSS RPPVSGLFSQ DNTTHQLFLN SRSYSQGGKD YSCFHGAREG VDEKAFFPDA  240
SGTDRSLPDS YQRYLTVDSY KGYSHTQFQS PADSAKKQEQ HCFVLGADFK SPELVKTEKK  300
TETRKPLHQF FGEWPPKNTD SWLDLASDSR VLTGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835000.10.0PREDICTED: growth-regulating factor 5-like isoform X1
TrEMBLA0A2I4FTN20.0A0A2I4FTN2_JUGRE; growth-regulating factor 5-like isoform X1
STRINGXP_007135443.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-59growth-regulating factor 5