PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010348-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 448aa MW: 50013.1 Da PI: 9.1112 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.4 | 7.1e-16 | 26 | 73 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 + pGfrF+Ptd el+++yL+kkveg++ ++ evi+evd+y +ePwdLp WALNUT_00010348-RA 26 MFPGFRFSPTDVELISFYLQKKVEGSDKRV-EVISEVDMYGYEPWDLPG 73 579************************999.99**************94 PP | |||||||
2 | NAM | 89.2 | 7.1e-28 | 136 | 211 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ew+fFs+r +kya+g +++r+t+ gyWkatgk ++v+s + e +g+k+tLvf+kgrapkge+t+W+mhey + WALNUT_00010348-RA 136 IQSDNEWFFFSPRGRKYANGLQSRRTTELGYWKATGKGRNVKS-GPEMIGTKRTLVFHKGRAPKGERTEWIMHEYCM 211 45789**************************************.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-16 | 21 | 75 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.741 | 26 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-23 | 28 | 210 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.41E-31 | 136 | 226 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MEVPSGETEI EGISKQAKIL ITASTMFPGF RFSPTDVELI SFYLQKKVEG SDKRVEVISE 60 VDMYGYEPWD LPGWFVASLG TYITLLFLSF FCKYAVLGYI SHLYILVKFL LTTTLVLNGL 120 GYSLLWVYLQ TAKSVIQSDN EWFFFSPRGR KYANGLQSRR TTELGYWKAT GKGRNVKSGP 180 EMIGTKRTLV FHKGRAPKGE RTEWIMHEYC MDGISQDTLV VCQLRKNSGF HLNDSSNRAS 240 SRQRNLLTLP SINHAVSKVG IEELGLSKGG EAVGRSHDSY SNNQTDSTAE YDQKLTNVAA 300 MAETSSHQKG AGIEEDLYAE ILRDDIVKLD ESSSSVTPRP LPVMTRAEGV AQQPIQEIAA 360 RGLPLQGRAN SRIKPRMKKA RVFPADASKL LETGEDENPN QEQPPKYPLG RFSLRTSNHW 420 RASLLFVILT SLALFVSLLG GSRCKLEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-20 | 139 | 227 | 70 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-20 | 139 | 227 | 70 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-20 | 139 | 227 | 70 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-20 | 139 | 227 | 70 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-20 | 139 | 227 | 73 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-20 | 139 | 227 | 70 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-20 | 139 | 227 | 70 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018829747.1 | 0.0 | PREDICTED: NAC domain-containing protein 60-like | ||||
TrEMBL | A0A2I4FDM7 | 0.0 | A0A2I4FDM7_JUGRE; NAC domain-containing protein 60-like | ||||
STRING | XP_006481513.1 | 6e-92 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7315 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44290.1 | 2e-55 | NAC domain containing protein 60 |