PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010188-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 469aa    MW: 51373 Da    PI: 7.8089
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010188-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17151200155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  WALNUT_00010188-RA 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-16151209IPR016177DNA-binding domain
PfamPF008475.3E-9151200IPR001471AP2/ERF domain
PROSITE profilePS5103217.794152208IPR001471AP2/ERF domain
SMARTSM003803.3E-32152214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17152209IPR001471AP2/ERF domain
CDDcd000181.77E-11152210No hitNo description
SuperFamilySSF541712.42E-6243287IPR016177DNA-binding domain
CDDcd000186.14E-14243288No hitNo description
SMARTSM003801.4E-13244292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLDLNLNVVL ADSTAGEDSV NFLEKFTEGS AGNQLDESGT SNSSIVNADV CEDDSCSTRA  60
TGELFTFNFD ILKVGGEKDV VTKELFPVSG GANGDFPNWQ GQSSSSSSSA KKNRIDLSFD  120
QGGGFGEVRV VQQQQQQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG VDADINFNLS DYEDDLKQMK NLTKEEFVHI LRRQSTGFSR  240
GSSKYRGVTL HKCGRWEARM GQLLGKKAYD KAAIKCNGRE AVTNFEPSTY EGEMISEASN  300
AGGNHNLDLN LGISPPSPGN GSKENEGCLQ FHSGTYDAHS QRTSKMENHV HATLTGPHFK  360
GLLMTSERSP SWNGLYPSCI PNEERATDKR TALGSPHGLL NWEWQMHGQV SATPMPLFST  420
AASSGFSFLA NSPSAAILPS KTPNTMPQNI CFAPSATQLP PTPNKFFTR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818899.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK031e-127RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2I4EHM80.0A0A2I4EHM8_JUGRE; ethylene-responsive transcription factor RAP2-7 isoform X3
STRINGXP_010112330.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-124related to AP2.7