PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009016-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 323aa MW: 35646.9 Da PI: 6.8547 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 250 | 272 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H r+H WALNUT_00009016-RA 250 FECPFCDKVFGSGQALGGHKRSH 272 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.1E-5 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.3E-7 | 214 | 272 | No hit | No description |
Pfam | PF13912 | 1.7E-7 | 214 | 233 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 46 | 214 | 234 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.6E-4 | 246 | 272 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.055 | 250 | 272 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.1E-11 | 250 | 272 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 250 | 272 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 252 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MERHKCKLCF RTFANGRALG GHMKAHLANL PLPPKPQQLG GPTEPALSSS SSSGEEQEED 60 QSLGEEAEDK ALIYGLRENP KKSFRLADPE FSFAVDAGSV VQDRESETES KNPTRQRSKR 120 NRKPGVSEIQ SQNVEMKKPK PSSSLVDSPE LLSSVSDTSP EEDVAMCLMM LSRDIWMRNN 180 EEQDEEQGKQ VQRSVKVKVR ESEEIKIRKV RGKHRCDKCK KTFRSFQALG SHKTICCRDE 240 TGNDGNERIF ECPFCDKVFG SGQALGGHKR SHLLGSSSTT TTTTTTIVTN AATSSPLKSE 300 TSAIDLNLPA PVEEDVFSVV SDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 119 | RQRSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819220.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2I4EIJ7 | 0.0 | A0A2I4EIJ7_JUGRE; zinc finger protein ZAT4-like | ||||
STRING | cassava4.1_011850m | 1e-136 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-43 | C2H2-like zinc finger protein |