PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008074-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | DBB | ||||||||
Protein Properties | Length: 211aa MW: 23398.2 Da PI: 5.9281 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.2 | 2.6e-06 | 3 | 45 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 kC+ +e+ e++ C ++ lC+ C ++ H H++v WALNUT_00008074-RA 3 IKCDVCEKLEAEVLCCADEAVLCRGCDEKVHAAnklsqkHERV 45 58******99*********************667788888776 PP | |||||||
2 | zf-B_box | 30.5 | 7.4e-10 | 63 | 105 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + + C+ ++e + +fC ++++llC+ C +++H g H+ WALNUT_00008074-RA 63 QLPPCDVCQERNGYFFCLEDRVLLCKHCDVTTHTGtpyaspHQ 105 6789******99*********************8777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.812 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.68E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.3E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-9 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-6 | 64 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.78E-4 | 65 | 109 | No hit | No description |
PROSITE profile | PS50119 | 8.717 | 67 | 109 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKIKCDVCEK LEAEVLCCAD EAVLCRGCDE KVHAANKLSQ KHERVRLVKH PLSSSSSSSS 60 HPQLPPCDVC QERNGYFFCL EDRVLLCKHC DVTTHTGTPY ASPHQRFLIA GLKVALQPSI 120 NHHDMIGFNS GNSSSPMSNS SFSFPADNES RAAMTLEVEA ASAETRATFS DEHHFATGLR 180 WSLDEIFDLK DFNYYEFSEV GSSSTPNCTK D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018834173.1 | 1e-157 | PREDICTED: B-box zinc finger protein 23 | ||||
TrEMBL | A0A2I4FRB2 | 1e-156 | A0A2I4FRB2_JUGRE; B-box zinc finger protein 23 | ||||
STRING | VIT_18s0089g01280.t01 | 7e-79 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18377 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-43 | light-regulated zinc finger protein 1 |