PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007218-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 584aa    MW: 64510.6 Da    PI: 6.6142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007218-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-17102148148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+ + + vk++G ++W++ a+ ++ gR +kqc++rw+++l
  WALNUT_00007218-RA 102 KGSWTKEEDDCIMEFVKKHGCKRWSLMAKFLP-GRIGKQCRERWHNHL 148
                         799*****************************.*************97 PP
2Myb_DNA-binding44.82.9e-14154197145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++WT eE+ +l  +++ +G++ W+ Iar ++  Rt++ +k++w+
  WALNUT_00007218-RA 154 KDAWTDEEESILGYYHQIYGNR-WAEIARFLPGSRTDNAIKNHWN 197
                         679*******************.*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.0547796IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-1178112IPR009057Homeodomain-like
PROSITE profilePS5129429.13897152IPR017930Myb domain
SuperFamilySSF466893.18E-2799196IPR009057Homeodomain-like
SMARTSM007178.2E-15101150IPR001005SANT/Myb domain
PfamPF002491.3E-16102148IPR001005SANT/Myb domain
CDDcd001678.11E-15104148No hitNo description
Gene3DG3DSA:1.10.10.601.5E-26113154IPR009057Homeodomain-like
PROSITE profilePS5129417.852153204IPR017930Myb domain
SMARTSM007175.6E-14153202IPR001005SANT/Myb domain
PfamPF002494.6E-11154197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20155205IPR009057Homeodomain-like
CDDcd001672.97E-10156197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MVEIKNEKEF SMDSDKEFRV ASCSSLSDGN SDTPVLRRRS VVGWFDLFMT LNTLDVSGTR  60
GFAIVLLKFF VSSLDKSAYL PGRSDIQCLH HWQKVLNPEL VKGSWTKEED DCIMEFVKKH  120
GCKRWSLMAK FLPGRIGKQC RERWHNHLDP DIKKDAWTDE EESILGYYHQ IYGNRWAEIA  180
RFLPGSRTDN AIKNHWNCSM KKKLNSQSSD GCQWDMFINI SPGFCSPESK PTSSDFFSSK  240
TKVECMKVNV EGQRFGKIFS LNHDMGLGHS VDTCPTDLVL GNAYGREICS MAESVTGEIS  300
ERGESEPLDP LNGTLFEGTG TAAASIITGS FDASAYTKPS CNSVEVLPVA GKLFESPKRL  360
GDYASGVMNT RVGNKSDNLF TTSRTLELDE DMSRVCIKNK VHSDLLHAVD TNHGCSPSEP  420
PLLSDLVNAI ETGGFLNSND YLRHPITPLC YSTPGSVQQG IYASGSSPES ILRNSAMTFK  480
NTPSIIRKKS STKAGNDVTC TPECRVSSIR GGRDVNSTDF QNMKQGFSSF FHRPETSVGF  540
VSLGRCLEYA FDLEKDSVPA NCGRSVSASA SQNPDIGANT MLIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-607920435159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-607920435159MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828708.10.0PREDICTED: uncharacterized protein LOC108997066 isoform X1
TrEMBLA0A2I4FAP10.0A0A2I4FAP1_JUGRE; uncharacterized protein LOC108997066 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-61myb domain protein 3r-5