PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005068-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 553aa    MW: 61971.4 Da    PI: 6.6147
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005068-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.87.7e-961845522374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         ve Ll++A+++++++l+laqa+L+rl+ + +sp g+p+qR+a+yf+eA ++ l+       +  +p+ +s+++ ++++  +k+fs +sPi+
  WALNUT_00005068-RA 184 VEDLLRAADCFDTNQLQLAQAILERLNPRlRSPVGKPLQRAAFYFKEAFQTLLTT----AGSNRTPRLSSWSEIVQTIRTYKAFSSISPIP 270
                         789************************988************************9....66667888999999****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          fsh+t+Nqa+lea++g++ +H++Dfdi+ G+Q++++++++++R+      +++p lRiT+v+++e   + e + ++e+L++fA+el++++
  WALNUT_00005068-RA 271 LFSHFTTNQALLEALHGSNFIHVVDFDIGFGGQYASFMKEISERSaepckaNNSPVLRITAVVPEE--YAVESRLIKENLTQFAHELKIRL 359
                         *********************************************87777777***********66..99999****************** PP

                GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
                         + ++++ +++e+l+++++++ +gE++a  l+  ++r l ++ s++     +L+ ++++sP vv+++++e  ++  + +sF + f+++le+y
  WALNUT_00005068-RA 360 QVEFVLLRTFEMLSFKAIKFMEGEKTALLLSPTIFRRLGSTNSIAA----FLSDLRRVSPSVVIFSDNEgwMEGpGVSSFRRNFVNSLEFY 446
                         **************************************66666666....*******************655556778************* PP

                GRAS 265 salfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                         s +f+sl+a++++     ++ +kvE +ll+++iv +v ++g++       +  Wre +  aG+++v+ls++a  qa++ll kv+++g++v 
  WALNUT_00005068-RA 447 SLMFESLDATVGSGGcggDWVKKVETVLLRPRIVAAVEAAGRR-------VPPWREVFCGAGMRAVQLSQFADFQAEYLLGKVQVRGFHVA 530
                         ***********99988989**********************98.......99*************************************** PP

                GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                         +++++lvl W+drp+v++SaWr
  WALNUT_00005068-RA 531 KRQAELVLWWHDRPMVATSAWR 552
                         *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.53157532IPR005202Transcription factor GRAS
PfamPF035142.7E-93184552IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRVTVNPPQT SQSPNPKPVP CNNNTVRNIG SHGSVNTPNQ LSYEPTSVLD IRRSPSPVIE  60
RPASTTESSA LTDVLSRPED PTIDQWEDHV LHSTLDWDSI IKELGLQDDP APALKSVLQF  120
NPCEPHVPQL PELPQSHPFD PIHFVQSDFN LSEVYSTHNL AHSLNSVNLA QDFHHFGLNG  180
FEIVEDLLRA ADCFDTNQLQ LAQAILERLN PRLRSPVGKP LQRAAFYFKE AFQTLLTTAG  240
SNRTPRLSSW SEIVQTIRTY KAFSSISPIP LFSHFTTNQA LLEALHGSNF IHVVDFDIGF  300
GGQYASFMKE ISERSAEPCK ANNSPVLRIT AVVPEEYAVE SRLIKENLTQ FAHELKIRLQ  360
VEFVLLRTFE MLSFKAIKFM EGEKTALLLS PTIFRRLGST NSIAAFLSDL RRVSPSVVIF  420
SDNEGWMEGP GVSSFRRNFV NSLEFYSLMF ESLDATVGSG GCGGDWVKKV ETVLLRPRIV  480
AAVEAAGRRV PPWREVFCGA GMRAVQLSQF ADFQAEYLLG KVQVRGFHVA KRQAELVLWW  540
HDRPMVATSA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2418955124377Protein SCARECROW
5b3h_D1e-2418955124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826470.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-170SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2I4F4920.0A0A2I4F492_JUGRE; scarecrow-like protein 15
STRINGXP_004300613.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-172GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]