PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00004242-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 477aa MW: 52661.8 Da PI: 5.7038

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00004242-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+s+++ ++ H ++ WALNUT_00004242-RA 123 YECPICGQSYRSEDEVSAHVDSC 145 99*****************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	2.3E-9	25	66	No hit	No description
CDD	cd09212	8.31E-21	171	266	No hit	No description
SuperFamily	SSF143503	3.27E-18	182	263	IPR018997	PUB domain
SMART	SM00580	2.0E-20	184	251	IPR018997	PUB domain
Pfam	PF09409	3.6E-16	184	253	IPR018997	PUB domain
SuperFamily	SSF54236	6.98E-14	333	444	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	2.3E-9	348	442	No hit	No description
PROSITE profile	PS50033	11.456	360	444	IPR001012	UBX domain
Pfam	PF00789	1.3E-5	362	416	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MGDMKDKVKG FMKKVNNPFS SSSSGKFKGQ GRVLGSSSSG PTNPILSRPS SQVPLPKPTP 60 SPSASASSTS KPLPEKLSDS DQTRSDSSNN STPNKKPADG FDPFGSLITS GKRSQNGYSI 120 NVYECPICGQ SYRSEDEVSA HVDSCVNKSV ENIGILDFPD NGAESRSELE SCIGAFVSGK 180 PSQGSVEVVL KLLRNIVREP ENVKFRKIRM SNPKIREAIG EIAGGVELLE FVGFELKEED 240 GEMWAVMEVP TEDRINLINS AITLLEPQKI EELQKKENLP PATSAQVEER VEQKRVDRQV 300 RVFFSVPESV AAKIVIPDSF FNLSHEELKR EADMRKKKIA ESQLLIPKSY KEKQAKAARR 360 RYKRTVIRIQ FPDGVVLQGV FAPWEPTSSL YEFVSSALKD PSLEFDLLHP VVVRRRVIPN 420 FPLQGETALT LDEEDLVPSA LIKFKPIETD SVVFTGLCND LLEISEPLGN DSAVAQY

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MGDMKDKVKG FMKKVNNPFS SSSSGKFKGQ GRVLGSSSSG PTNPILSRPS SQVPLPKPTP  60
SPSASASSTS KPLPEKLSDS DQTRSDSSNN STPNKKPADG FDPFGSLITS GKRSQNGYSI  120
NVYECPICGQ SYRSEDEVSA HVDSCVNKSV ENIGILDFPD NGAESRSELE SCIGAFVSGK  180
PSQGSVEVVL KLLRNIVREP ENVKFRKIRM SNPKIREAIG EIAGGVELLE FVGFELKEED  240
GEMWAVMEVP TEDRINLINS AITLLEPQKI EELQKKENLP PATSAQVEER VEQKRVDRQV  300
RVFFSVPESV AAKIVIPDSF FNLSHEELKR EADMRKKKIA ESQLLIPKSY KEKQAKAARR  360
RYKRTVIRIQ FPDGVVLQGV FAPWEPTSSL YEFVSSALKD PSLEFDLLHP VVVRRRVIPN  420
FPLQGETALT LDEEDLVPSA LIKFKPIETD SVVFTGLCND LLEISEPLGN DSAVAQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	2e-12	316	477	24	177	Tether containing UBX domain for GLUT4
5ifs_C	2e-12	316	477	24	177	Tether containing UBX domain for GLUT4
5ifw_A	6e-13	316	477	24	177	Tether containing UBX domain for GLUT4
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Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018837871.1	0.0	PREDICTED: plant UBX domain-containing protein 2 isoform X1
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A2I4G1U9	0.0	A0A2I4G1U9_JUGRE; plant UBX domain-containing protein 2 isoform X1
STRING	evm.TU.contig_27573.2	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]