PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004242-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 477aa MW: 52661.8 Da PI: 5.7038 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 123 | 145 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+s+++ ++ H ++ WALNUT_00004242-RA 123 YECPICGQSYRSEDEVSAHVDSC 145 99*****************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 2.3E-9 | 25 | 66 | No hit | No description |
CDD | cd09212 | 8.31E-21 | 171 | 266 | No hit | No description |
SuperFamily | SSF143503 | 3.27E-18 | 182 | 263 | IPR018997 | PUB domain |
SMART | SM00580 | 2.0E-20 | 184 | 251 | IPR018997 | PUB domain |
Pfam | PF09409 | 3.6E-16 | 184 | 253 | IPR018997 | PUB domain |
SuperFamily | SSF54236 | 6.98E-14 | 333 | 444 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 2.3E-9 | 348 | 442 | No hit | No description |
PROSITE profile | PS50033 | 11.456 | 360 | 444 | IPR001012 | UBX domain |
Pfam | PF00789 | 1.3E-5 | 362 | 416 | IPR001012 | UBX domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MGDMKDKVKG FMKKVNNPFS SSSSGKFKGQ GRVLGSSSSG PTNPILSRPS SQVPLPKPTP 60 SPSASASSTS KPLPEKLSDS DQTRSDSSNN STPNKKPADG FDPFGSLITS GKRSQNGYSI 120 NVYECPICGQ SYRSEDEVSA HVDSCVNKSV ENIGILDFPD NGAESRSELE SCIGAFVSGK 180 PSQGSVEVVL KLLRNIVREP ENVKFRKIRM SNPKIREAIG EIAGGVELLE FVGFELKEED 240 GEMWAVMEVP TEDRINLINS AITLLEPQKI EELQKKENLP PATSAQVEER VEQKRVDRQV 300 RVFFSVPESV AAKIVIPDSF FNLSHEELKR EADMRKKKIA ESQLLIPKSY KEKQAKAARR 360 RYKRTVIRIQ FPDGVVLQGV FAPWEPTSSL YEFVSSALKD PSLEFDLLHP VVVRRRVIPN 420 FPLQGETALT LDEEDLVPSA LIKFKPIETD SVVFTGLCND LLEISEPLGN DSAVAQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ifs_A | 2e-12 | 316 | 477 | 24 | 177 | Tether containing UBX domain for GLUT4 |
5ifs_C | 2e-12 | 316 | 477 | 24 | 177 | Tether containing UBX domain for GLUT4 |
5ifw_A | 6e-13 | 316 | 477 | 24 | 177 | Tether containing UBX domain for GLUT4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018837871.1 | 0.0 | PREDICTED: plant UBX domain-containing protein 2 isoform X1 | ||||
Swissprot | Q9ZU93 | 0.0 | PUX2_ARATH; Plant UBX domain-containing protein 2 | ||||
TrEMBL | A0A2I4G1U9 | 0.0 | A0A2I4G1U9_JUGRE; plant UBX domain-containing protein 2 isoform X1 | ||||
STRING | evm.TU.contig_27573.2 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8944 | 25 | 29 |
Publications ? help Back to Top | |||
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