PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003640-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 481aa    MW: 52902.2 Da    PI: 5.9445
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003640-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.7e-29123179259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK vkg+ef rsYY+Ct ++C+vkk++ers+ d+++ ++tY g+H+h+
  WALNUT_00003640-RA 123 EDGYNWRKYGQKLVKGNEFIRSYYKCTNPTCQVKKQLERSH-DGHIRDTTYFGQHDHP 179
                         7****************************************.***************8 PP
2WRKY1062e-33287345159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpkvv+ tYeg+H+h+
  WALNUT_00003640-RA 287 VNDGYRWRKYGQKFVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVIATYEGQHDHD 345
                         58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-26115181IPR003657WRKY domain
PROSITE profilePS5081123.25117181IPR003657WRKY domain
SuperFamilySSF1182901.09E-23118181IPR003657WRKY domain
SMARTSM007741.8E-31122180IPR003657WRKY domain
PfamPF031067.4E-22123179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-35273347IPR003657WRKY domain
SuperFamilySSF1182901.7E-29279347IPR003657WRKY domain
PROSITE profilePS5081135.783282347IPR003657WRKY domain
SMARTSM007749.6E-39287346IPR003657WRKY domain
PfamPF031062.3E-26288344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MISSGERAPD AVVSDELQQR QSSGGGVPSQ PIPDGRFHSS KQKCDDEIHA KQTEQEATTS  60
SLIPEKASEL PDAAVPTMQS DHEGSNSFII SEKALQAPDT SILVSQSGRE GTTPSTIREK  120
VTEDGYNWRK YGQKLVKGNE FIRSYYKCTN PTCQVKKQLE RSHDGHIRDT TYFGQHDHPR  180
PQLNVPVAVG FAVSISDERP SEPSLIGARD QPFIEHSQTS HHMEPVDAPP PSQPSRMRDG  240
VDNDDHDHDT GSKRQKKEKC YVDAVPVDKP ASEPRLVVQT LSEVDFVNDG YRWRKYGQKF  300
VKGNPNPRSY YRCSSPGCPV KKHVERASHD PKVVIATYEG QHDHDMPPTR TVTHNTVGPN  360
VFSVADNFEA GTKSEENNAV CLDMVIHTSS GPKFKSNELL NGESRTEPVV SSLVGVHMVV  420
HSSVAGEGKS NDQLNGKQIV ESSTKSEESD AVCHDMVAHD TPGLEANINE QQTPTGEPVQ  480
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-36121348275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824691.10.0PREDICTED: WRKY transcription factor 1 isoform X1
SwissprotQ9SI371e-89WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A2I4EZ730.0A0A2I4EZ73_JUGRE; WRKY transcription factor 1 isoform X1
STRINGEMJ164831e-158(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.16e-90zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]