PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002718-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ARR-B | ||||||||
Protein Properties | Length: 732aa MW: 80940 Da PI: 7.2883 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 59.5 | 7.3e-19 | 220 | 263 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+ WALNUT_00002718-RA 220 KPRVVWSVELHRKFVAAVHQL-GIDKAVPKKILDLMNVEKLTREN 263 79*******************.********************987 PP | |||||||
2 | Response_reg | 77 | 7e-26 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ + +l+++l++ +y +v+++ ++ +al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++++++ + WALNUT_00002718-RA 38 VLAVDDDPTCLFVLETLLRRCQY-HVTTTNQAIKALKLLRENKnnFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANDDPKLVMKG 126 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ eel + WALNUT_00002718-RA 127 ITHGACDYLLKPVRTEELKN 146 *****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 9.8E-153 | 11 | 694 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.9E-42 | 35 | 159 | No hit | No description |
SuperFamily | SSF52172 | 1.85E-35 | 35 | 156 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.2E-31 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.25 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.2E-23 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.25E-26 | 39 | 151 | No hit | No description |
SuperFamily | SSF46689 | 1.36E-11 | 217 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-20 | 218 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-15 | 220 | 263 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MPTDGIRLQR TFTNQKQKMT VEPIMDDSRD QFPIGMRVLA VDDDPTCLFV LETLLRRCQY 60 HVTTTNQAIK ALKLLRENKN NFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANDDP 120 KLVMKGITHG ACDYLLKPVR TEELKNIWQH VVRRKKFDSK DSNNSGSQDK PHPGIGGGSG 180 SAGTLSDPNG KLNKKRKDQN EDEDEEHDEN VNDDPSTQKK PRVVWSVELH RKFVAAVHQL 240 GIDKAVPKKI LDLMNVEKLT RENKYRLYLK RLNSMVNQQA NMAAALGGTD SSYLRMGSLN 300 GLENFHTLNG SGQFHNTSFR SFPPSGLLGR LNTPAGMGMR GLSSSGMTQL SHARSSSGST 360 VDQADSQQVI HPGNHNGGVL QGMPMTLELD QLQHIKGVTH VRELSTAIDN RAIFPICSGL 420 LDAKTNIGSS SNPLLGVANT TLMLEQNPRA VQGGEVFGNR SPVSLASLNS ELSSPLLDHR 480 RLNENWSTAA QSSGIHSNSF QLNDCFKQTT QSTMHQSNVR DDISKRAIQM GSNLHDVSSA 540 TSVSTELQDR RSDMQCGASL TSSNAGKINN HAGPQCWVDH NQDSSYRSNV MCSTMNSMIP 600 VQGAVGPFVQ SSDPKNFHPD MDFNSIGQSN LFDPSYTKHD EVNKSHVETS LKLKQGLRDQ 660 RKPQESYISS SFGSLEDIVT AMVKRTPAIR LKQSGYINFV DQWDVVGELS IAHQSVISSY 720 EQIYSFKSTL FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-18 | 216 | 273 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850232.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Refseq | XP_018850233.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Refseq | XP_018850234.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Swissprot | P62598 | 1e-134 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | A0A2I4H281 | 0.0 | A0A2I4H281_JUGRE; Two-component response regulator | ||||
STRING | XP_002515447.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-127 | response regulator 12 |