PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002566-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 383aa MW: 42278 Da PI: 6.6611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002566-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	6.9e-07	158	179	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C Cgk F+r nL+ H+r H WALNUT_00002566-RA 158 FCDVCGKGFKRDANLRMHMRAH 179 6*******************99 PP
2	zf-C2H2	11.8	0.00076	243	266	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs s+Lk+H++ + WALNUT_00002566-RA 243 YSCNRCNkKSFSVVSDLKNHLKHC 266 99*******************977 PP
3	zf-C2H2	12	0.00062	274	290	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ WALNUT_00002566-RA 274 TCGTSFSRKDKLFGHMA 290 6**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.41E-6	156	180	No hit	No description
SMART	SM00355	0.002	157	179	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.217	157	184	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.6E-6	158	179	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	59	205	238	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	12	243	265	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	230	271	295	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MFNTSESFQI PAAYSALFGS DPSNVRLGHS DLRVPLLNLS TVRVRMDTLQ RFLSESVNSN 60 QLIGWDHLEV VSSEIASAIH QIIVNGTALL SCTQTPRPIE SVPNSSTIPP KILGESSGSL 120 KEEAFDEGVK DKVLVAEPDD SEIVELDAVE LLAQHIHFCD VCGKGFKRDA NLRMHMRAHG 180 NQYKTPEALA KPERLCAEPS RDTKFSCPFE GCNRNRLHKK FRPLKSVICV KNHFKRSHCP 240 KMYSCNRCNK KSFSVVSDLK NHLKHCGEAR WRCTCGTSFS RKDKLFGHMA LFEGHMPAVG 300 DEDERAKDLA ADAAALTTRT TAMEEDEDEV VVITKGAGEL APANSLENGL FEGLLGGFGS 360 IESFCFQDVL CSPNGFHGCD FGR

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MFNTSESFQI PAAYSALFGS DPSNVRLGHS DLRVPLLNLS TVRVRMDTLQ RFLSESVNSN  60
QLIGWDHLEV VSSEIASAIH QIIVNGTALL SCTQTPRPIE SVPNSSTIPP KILGESSGSL  120
KEEAFDEGVK DKVLVAEPDD SEIVELDAVE LLAQHIHFCD VCGKGFKRDA NLRMHMRAHG  180
NQYKTPEALA KPERLCAEPS RDTKFSCPFE GCNRNRLHKK FRPLKSVICV KNHFKRSHCP  240
KMYSCNRCNK KSFSVVSDLK NHLKHCGEAR WRCTCGTSFS RKDKLFGHMA LFEGHMPAVG  300
DEDERAKDLA ADAAALTTRT TAMEEDEDEV VVITKGAGEL APANSLENGL FEGLLGGFGS  360
IESFCFQDVL CSPNGFHGCD FGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834494.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBL	A0A2I4FS69	0.0	A0A2I4FS69_JUGRE; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRING	cassava4.1_009526m	1e-148	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6855	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	6e-79	C2H2 family protein