PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001621-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 305aa MW: 34567.5 Da PI: 5.3517

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001621-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	231	253	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H WALNUT_00001621-RA 231 YKCETCKKTFRSYQALGGHRASH 253 9***********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.35E-5	229	255	No hit	No description
Pfam	PF13912	1.4E-11	230	255	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.346	231	258	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	233	253	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MRALGGHMRS HMLNLPVPAR PELSPLPPPP PPAPAPAPLP PHDQFSETES ASSPSSSSGE 60 EEGGGEEKGL CYELRENPKR SIRFVDPEFS FAVDAGSVVL QDGESETESS KNPTRRRSKR 120 TLNLEQKYHL LHHDHQRVQE QDDDAMKKLK FTMNKAESWA EPEPVSSISD TTTEEDVAFC 180 LMMLSRDKWK KQEQDDEDED LEDESERSLE DMTDESEEQL KMSKTRTRGR YKCETCKKTF 240 RSYQALGGHR ASHKKIKLNS APIYELKLEQ KNAGPPSMTE KKIHECPNSA EEEIDARKVK 300 VLTVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018820138.1	0.0	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A2I4EL64	0.0	A0A2I4EL64_JUGRE; zinc finger protein ZAT9-like
STRING	cassava4.1_010237m	1e-86	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-28	C2H2-like zinc finger protein