PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00001618-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 495aa MW: 53211.6 Da PI: 6.9711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.4 | 1.9e-16 | 301 | 346 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++++L++l+P++ K +Ka++L +++eY+k+Lq WALNUT_00001618-RA 301 HNQSERKRRDKINQRISTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 346 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.06E-19 | 294 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.796 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-14 | 301 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.55E-17 | 301 | 350 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.8E-19 | 301 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-18 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 495 aa Download sequence Send to blast |
MSRCVPSWDF DDNPNPTSLS LRYHSNSSTP DGPMFEVAEL TWENGQIAMH GLGQARVPVK 60 RITPTIANTT ANPTSNSKYP TWEKPCASGT LESIVNQATG SPPEPKESSP LHGCSEHSVH 120 REAIAATPSA TMTMDALVPC SNLTSEVDQA TQTQGGQVVD GLGTCVGSCS GTAATTVQDK 180 DKDKDKDKDV FLGGKGAGEE RVTAEWSSRD ESFTGSATCG MNSHHPTDLD TCERDLRVGS 240 PEQACSPSKT STKTTNTAAA DDHDSVCHSS PPREAGDHTK KKGTGKFNTV STKRSRAAAI 300 HNQSERKRRD KINQRISTLQ KLVPNSSKTD KASMLDEVIE YLKQLQAQVQ MMSRMNMQPA 360 AMMLPMTMQQ LPMPMMAQMG MGMGMAGFGM GTMHGMDMNM NNTAINHRSN ISTGGISPSH 420 VLHPAATHAA FMPIASWRPD ASSDRFQATS HAAVIPDPLS TFLSCQSQGI TMEAYSKLQA 480 AMYQQQQPPP SSSKS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 304 | 309 | ERKRRD |
2 | 305 | 310 | RKRRDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820122.1 | 0.0 | PREDICTED: transcription factor UNE10-like isoform X2 | ||||
TrEMBL | A0A2I4EL48 | 0.0 | A0A2I4EL48_JUGRE; transcription factor UNE10-like isoform X2 | ||||
STRING | XP_002511647.1 | 1e-148 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5676 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00050.1 | 3e-73 | bHLH family protein |