PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001510-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 268aa MW: 29347.1 Da PI: 8.6921

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001510-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H WALNUT_00001510-RA 48 FSCSFCKREFSTSQALGGHQNAH 70 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.4E-5	42	74	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.45E-6	44	75	No hit	No description
PROSITE profile	PS50157	11.552	48	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	50	70	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MELSLFKYSA INVGSSSSSS DQEAANEPIS DKNPSEKLSV SETTTKVFSC SFCKREFSTS 60 QALGGHQNAH KQERALAKRR QAGMDMAAAS AFGHPNFPNY YPYSSISSQY PKYGSLSTQR 120 SNNNIGVRMD SMIHKPSSSL PWPTSSGSTF RPFGQGGWSS RQAMLMNNSQ PLSLDQRLRL 180 EGFQAHNGAI TLHNSAGNTS ASRFEEIGAA SSSTNIHSTS INNEIRPAST SDFLNRDKQQ 240 LPPPRSSNDH HHDHHDTDHQ GLDLSLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018815890.1	0.0	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A2I4E907	0.0	A0A2I4E907_JUGRE; zinc finger protein 3-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-17	C2H2 family protein