PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001493-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 426aa    MW: 47407.1 Da    PI: 6.8092
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001493-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.29.8e-10123165345
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  WALNUT_00001493-RA 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165
                         568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-8115168No hitNo description
SMARTSM003389.8E-8121184IPR004827Basic-leucine zipper domain
PfamPF077165.9E-7121167IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415123167IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7125168No hitNo description
CDDcd147086.01E-22125177No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
PfamPF141449.6E-31207280IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MESVTDNPIG SFIFSQLQVY PLPLPTFHGQ SINNLSPSSL DINPFAFQVE HQRLPLEKGQ  60
PSNQVSISSG HLENREEPAM ADASPGTDIS TDVDTDDKNQ RFDGQSLGNV ASDSSDRSKD  120
KSDQKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQRARQ QGIFISSSGD  180
QAHSMSGNGA MAFDVEYGRW LEEQNRQINE LRSAVNSHAS DTELRIIVDN ILAHYDEIFR  240
QKGIAAKADV FHLLSGMWKT PAERCFLWLG GVRSSELLKV RVSSGTFTRI GEVNMLLLNQ  300
LEPLTEQQLV GITNLQQSSQ QAEDALSQGM EALQQSLSET LSSGSLGSSG SSGNVANYMG  360
QMAMAMGKLG TLEGFIRQAD NLRQQTLQQM HRILTTRQSA RALLAIHDYF SRLRALSSLW  420
LARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818239.10.0PREDICTED: transcription factor TGA2.2-like isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A2I4EFR10.0A0A2I4EFR1_JUGRE; transcription factor TGA2.2-like isoform X2
STRINGVIT_13s0084g00660.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-144TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]