PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001188-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 40940.1 Da PI: 5.445 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.4 | 1.1e-07 | 86 | 118 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lr++lP + ++K +Ka+ L +++eYI+ Lq WALNUT_00001188-RA 86 SFQILRDILPRN----DQKRDKASFLLEVIEYIQFLQ 118 599********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 47 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.426 | 48 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.14E-9 | 50 | 121 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-9 | 86 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-5 | 87 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MVKPAKSHDH DHDHEFDDDD DEDDVARNSS CSRISRGDGK SRDQRTMAHR SKHSETEQRR 60 RSKINERQAF FFIFKNFFFF FVNFCSFQIL RDILPRNDQK RDKASFLLEV IEYIQFLQDK 120 LNMYEGQYRG WSSEPKKLIP WRNNRGPAES FADHSQVIKN GFGFENNTVP PALLTNAQNS 180 PESELGTTAV YKALDNPTGS ATPLAPSNVQ MKLNMFDPVV RGGVPTQPLQ ESVSDAENMS 240 SQPQSQWWHA RPYPTECDVQ NSTLNEQELA VDGGSVSISN SYSEEILNSL TQALQSSGVD 300 LSQTCISVQI NAGKPANSRL NGVASNSKDD ETESLNDRVM GHAVVASCRN ESGLAHKRLR 360 TEES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816956.1 | 0.0 | PREDICTED: transcription factor BIM2-like | ||||
Refseq | XP_018816957.1 | 0.0 | PREDICTED: transcription factor BIM2-like | ||||
Refseq | XP_018816958.1 | 0.0 | PREDICTED: transcription factor BIM2-like | ||||
Refseq | XP_018816959.1 | 0.0 | PREDICTED: transcription factor BIM2-like | ||||
TrEMBL | A0A2I4EC35 | 0.0 | A0A2I4EC35_JUGRE; transcription factor BIM2-like | ||||
STRING | XP_006482443.1 | 1e-130 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1730 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 5e-54 | BES1-interacting Myc-like protein 2 |