PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000989-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 609aa MW: 65659.2 Da PI: 7.2415

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000989-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	2e-30	259	318	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+rs ed +++++tYeg+Hnh+ WALNUT_00000989-RA 259 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRSFEDMSILITTYEGTHNHP 318 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-31	244	320	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	252	320	IPR003657	WRKY domain
PROSITE profile	PS50811	28.633	254	320	IPR003657	WRKY domain
SMART	SM00774	1.3E-36	259	319	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	260	318	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MEPAKDQRSG HDGGGGVKEE LNRYESSGFE EGFNEKTTAI DQAGNHGRPC HEHQDLKSSS 60 PLQKDSSCSK KDDQLQSARA EMGEVREENQ RLKKYLDLIM KDYQTLQMQF YDIVQQDGRK 120 ATDDSAKNHQ EIEEPGFVSL SLGRAPSDTK KGEKSSTTVS SQRKEADEQA KEGLSLGLMD 180 YKLELSKSRE GRESLSKTSP VNSSDQEPIK EEADHQETSP LGKAQKTMRS EDDHEAVPQQ 240 NPVKKARVSV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS CPVRKQVQRS 300 FEDMSILITT YEGTHNHPLP MSATAMASTT SAAASMLLSG SSSSRPGHGP SATTVSTTAA 360 DLHGLNFYLS DNSKSNHFYL SNSSYSSSPS FPTITLDLTS TPSSSSSHFN KANSSNYPPR 420 YSPASLNFSS SESNTASWAN GFLNYGSTTQ PYSRNQLGNL SMGRQSVENI FQSYMQKKNP 480 TLPQHSSLPD PIAAATKAIT ADPSFQSALA AALTSIIGTG GASAAAGAIG NQSGENFGQK 540 STLGELFPMS STGLLPAPKG NGCASSLLNK THSTNSQPTS LMFLPPSLPF STSKSASTSP 600 GDNRDHSTD

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MEPAKDQRSG HDGGGGVKEE LNRYESSGFE EGFNEKTTAI DQAGNHGRPC HEHQDLKSSS  60
PLQKDSSCSK KDDQLQSARA EMGEVREENQ RLKKYLDLIM KDYQTLQMQF YDIVQQDGRK  120
ATDDSAKNHQ EIEEPGFVSL SLGRAPSDTK KGEKSSTTVS SQRKEADEQA KEGLSLGLMD  180
YKLELSKSRE GRESLSKTSP VNSSDQEPIK EEADHQETSP LGKAQKTMRS EDDHEAVPQQ  240
NPVKKARVSV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS CPVRKQVQRS  300
FEDMSILITT YEGTHNHPLP MSATAMASTT SAAASMLLSG SSSSRPGHGP SATTVSTTAA  360
DLHGLNFYLS DNSKSNHFYL SNSSYSSSPS FPTITLDLTS TPSSSSSHFN KANSSNYPPR  420
YSPASLNFSS SESNTASWAN GFLNYGSTTQ PYSRNQLGNL SMGRQSVENI FQSYMQKKNP  480
TLPQHSSLPD PIAAATKAIT ADPSFQSALA AALTSIIGTG GASAAAGAIG NQSGENFGQK  540
STLGELFPMS STGLLPAPKG NGCASSLLNK THSTNSQPTS LMFLPPSLPF STSKSASTSP  600
GDNRDHSTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-21	259	320	17	77	Probable WRKY transcription factor 4
2lex_A	8e-21	259	320	17	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831437.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-129	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2I4FIH2	0.0	A0A2I4FIH2_JUGRE; probable WRKY transcription factor 61
STRING	EOY21754	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-65	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]