PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g12000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 338aa    MW: 37549.9 Da    PI: 9.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g12000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11110138331
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                      ++h+e+ErrRR+riN+ +++Lr+llP+ +
  Vradi11g12000.1 110 KSHSEAERRRRERINNHLAKLRSLLPNTT 138
                      79************************962 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.037107195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-11110139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8110137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13110144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-6113201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-11177200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13178198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.80E-5231307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQPWSMPPVH SFNPGPVHYN NNTNPVRDHH DQTFIVPPTP SPYASFFSRR VPSLQFAYES  60
PSSDHHHLRI ISDTLGPMVQ PGSAPFGLQA ELGKMTAQEI MEAKALAASK SHSEAERRRR  120
ERINNHLAKL RSLLPNTTKS VRKVHYMSLI FHNLPGKKRC LLCAVQSYKK VVLILLWQTD  180
KASLLAEVIQ HVKELKRQTS LIAESSAVPT EADELTVDAA DEDGKFVIKA SLCCEDRSDL  240
LPDLIKTLKA LKLRTLKAEI TSLGGRVKNV LVIAGDEESS NTNGEQSIQQ QQQYCITSIQ  300
EALKAVMEKS GVGDESASGN VKRQRTNNIN FLQQRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g12000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520421.10.0transcription factor bHLH30
RefseqXP_022631708.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-100BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S3VPW10.0A0A1S3VPW1_VIGRR; transcription factor bHLH30
STRINGXP_007153337.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]