PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g10580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 480aa    MW: 52362.5 Da    PI: 7.9327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g10580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30160219159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt +  Cpv+k+v+r+aed +++++tYeg Hnh+
  Vradi11g10580.1 160 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpLCPVRKQVQRCAEDMSILITTYEGIHNHP 219
                      58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31146221IPR003657WRKY domain
SuperFamilySSF1182906.02E-27153221IPR003657WRKY domain
PROSITE profilePS5081128.162155221IPR003657WRKY domain
SMARTSM007744.9E-37160220IPR003657WRKY domain
PfamPF031064.7E-26161219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MQVQKLESAK KVLEEAREEN KMLKFLDILQ QGNSANAKGV TSHEESEESE LVSLSLGISL  60
KGKTKGERKH CKREDEGMDK GLRLGLDINL DPVDHAEAAN VSSTASSSGE GGKEEEPSEM  120
WPPSKVLKAM KNVDKTEASQ NDQPKKTRVS IRARCDTQTM NDGCQWRKYG QKMAKGNPCP  180
RAYYRCTVSP LCPVRKQVQR CAEDMSILIT TYEGIHNHPL PISATAMACT TSAAASMLQS  240
PSLSSQHGHG LVNSAISSIT NFTAPNYNLH NALNFSTYHV SRPHQFYFPN SSISSLNSHP  300
TITLDLTAPP TSSNLNISSG FSPLQSSMSP SPWSSYSSYF NSGAPTHDRN HGDYLLNTGH  360
QNRPYLEHLH HPICTSNNNF SQRSLPDSII AATKAITSNP KFQSVLATAL TTYVGNEAGG  420
GRLRENHVLE NAELNLKLCS ENTIGCASSR YLNVSSSALN PQQGNSSIFP LPSLPEQWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20147221174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g10580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519759.10.0probable WRKY transcription factor 72
TrEMBLA0A1S3VNV40.0A0A1S3VNV4_VIGRR; probable WRKY transcription factor 72
STRINGXP_007157685.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-47WRKY DNA-binding protein 72