PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 175aa MW: 18947.4 Da PI: 6.9739

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g02410.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.2	2.7e-15	12	60	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +Wv+eIr+p+ + r++lg+f t+e+Aa+a++ a+++l+g Vradi11g02410.1 12 LYRGIR--SRGRKWVSEIREPR----KaSRIWLGTFPTPEMAAAAYDVAALALKG 60 69*7..44568***94....36*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.09E-13	11	70	No hit	No description
Pfam	PF00847	1.6E-8	11	60	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-24	12	69	IPR001471	AP2/ERF domain
SMART	SM00380	2.7E-25	12	74	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.505	12	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-16	12	70	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MAPSPSSKRH PLYRGIRSRG RKWVSEIREP RKASRIWLGT FPTPEMAAAA YDVAALALKG 60 DGAVLNLPHS VSKYQIPATN SAADIRTAAS AAAAMMKAET ESSHNIASQT ETTHIDATTW 120 RFENDFLDEE AIFGMPSLLV DMAGGMLLSP PRMSPPPSDN SPEKQAAETL WSYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-14	10	72	12	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g02410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520566.1	1e-125	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	5e-46	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1S3VQA5	1e-124	A0A1S3VQA5_VIGRR; ethylene-responsive transcription factor ERF027-like
STRING	XP_007158457.1	1e-94	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36450.1	1e-28	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]