PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 181aa MW: 19747.3 Da PI: 7.1343

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g01710.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.3	4.4e-09	2	28	30	56
AP2 30 rfslgkfgtaeeAakaaiaarkklege 56 r++lg+++tae Aa a+++a+ kl+ge Vradi11g01710.1 2 RVWLGTYDTAEAAAYAYDRAAYKLRGE 28 79***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	14.144	1	35	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-5	2	41	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-11	2	35	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-5	2	28	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-15	2	36	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLKDP TKLGFGDSAR LNALKSSVDA 60 KIQAICQKVK RERAKKIAAK KLSSATAHAN RKESEKINSS ASSSSSSLPL SPPSIFCDNW 120 ANELFSPTVS EDGIWKGENS PTSVSTECPM MVTDETEFEG CSLARLPSFD PELIWEVLAV 180 *

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g01710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014519928.1	1e-129	ethylene-responsive transcription factor ERF061
Swissprot	Q9C7W2	4e-33	ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBL	A0A1S3VNG8	1e-127	A0A1S3VNG8_VIGRR; ethylene-responsive transcription factor ERF061
STRING	XP_007158572.1	1e-95	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7181	31	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64380.1	3e-24	ERF family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]