PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 890aa    MW: 98740.3 Da    PI: 4.7419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.3e-11751794146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+W++++ el+++a+++lG++ ++ I + ++  +t+ q+k+++ k
  Vradi11g01070.1 751 RGKWSKQDTELFYEAIRELGTD-FSMIQQLFP-DKTRRQIKLKYKK 794
                      89********************.*********.***********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159638.3E-26744825No hitNo description
Gene3DG3DSA:1.10.10.607.9E-7746794IPR009057Homeodomain-like
PROSITE profilePS512939.337749797IPR017884SANT domain
SMARTSM007171.1E-9750798IPR001005SANT/Myb domain
SuperFamilySSF466895.98E-10752798IPR009057Homeodomain-like
CDDcd001673.18E-7753794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MDPFDDLLPE TTVARIRPGT KFAPKAKAKQ RPRKEVPSSE HATSSKDAGN ECQNVGPSTL  60
SVPAKESMGF IHQTQVQFPN SESGNPDQDS VQGDSAALVD SSTITVSEIG AGQNSTNFLE  120
SAFEAGPTDF DGDSVTNFVF ETNLNNGTTQ PVHHANVVVN KLNNLAAPFS SCSTIDRMKE  180
PPKNWEGSFL DINKYLELID NSLQLGTDLS FGSVSDNKVV SAEIELDPFS DVLPDLPARN  240
AHKFKPKIKP RPRVGNMPAS ASSDVMMEKS VELPTSCSTD FQSFQSTSVL NQSTSLPLPT  300
SEILRKTYMP DKFGNTSSNV SISEDSKSLA AATPSQLDSL NAMLSVDAVH NGTRDWPSTF  360
GKSSGEAADI FSGLESLDDF LTQATTDTGK PALHSFNEKG AEENFVTPVC SSINSFRECD  420
NTQVQRCPTP QDPVTFNEAT DLNESDTHTK NRMSETEEIV DLNPAYPIDD VFDYQSMKSG  480
EDPTSGIPVH EDLTNAADSS TLADLLHAND SREKEVANQR NRDGSDSCSL RKNKRSSISG  540
EEDNGGKTSR QRRKLAACKP KNSSLNEDVE DDNDIDSPYH SNEHELQEND DDYEVDHSSK  600
KKRGSKSSQK KSVAKSGKTS QRRKKADDDV QKTKEPPKKF SHSTRRKKRC VDKALLEIPE  660
DELDLRTLPI KDIILLAEHR ERQAKKDAMT SNMSPSNQSG GDSLHGAGAY NEHEFSGSED  720
GEDPYDDQDN ERIASTSVLY NYQTFMEKTP RGKWSKQDTE LFYEAIRELG TDFSMIQQLF  780
PDKTRRQIKL KYKKEEREHY LRLRDAIHNR AKDHSHYKLL IERLQLASTK TEEVMDLTTG  840
ANEEVVEAAT IKHDADVKQQ EDSPAVQNPE EYDDSEDDSL KWSQYKSLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520701.10.0uncharacterized protein LOC106777581
RefseqXP_014520702.10.0uncharacterized protein LOC106777581
RefseqXP_014520703.10.0uncharacterized protein LOC106777581
RefseqXP_014520704.10.0uncharacterized protein LOC106777581
RefseqXP_014520705.10.0uncharacterized protein LOC106777581
RefseqXP_022631476.10.0uncharacterized protein LOC106777581
TrEMBLA0A1S3VQP00.0A0A1S3VQP0_VIGRR; uncharacterized protein LOC106777581
STRINGXP_007157057.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-47MYB_related family protein