PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g01070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 890aa MW: 98740.3 Da PI: 4.7419 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.3e-11 | 751 | 794 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W++++ el+++a+++lG++ ++ I + ++ +t+ q+k+++ k Vradi11g01070.1 751 RGKWSKQDTELFYEAIRELGTD-FSMIQQLFP-DKTRRQIKLKYKK 794 89********************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 8.3E-26 | 744 | 825 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-7 | 746 | 794 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.337 | 749 | 797 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-9 | 750 | 798 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.98E-10 | 752 | 798 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-7 | 753 | 794 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 890 aa Download sequence Send to blast |
MDPFDDLLPE TTVARIRPGT KFAPKAKAKQ RPRKEVPSSE HATSSKDAGN ECQNVGPSTL 60 SVPAKESMGF IHQTQVQFPN SESGNPDQDS VQGDSAALVD SSTITVSEIG AGQNSTNFLE 120 SAFEAGPTDF DGDSVTNFVF ETNLNNGTTQ PVHHANVVVN KLNNLAAPFS SCSTIDRMKE 180 PPKNWEGSFL DINKYLELID NSLQLGTDLS FGSVSDNKVV SAEIELDPFS DVLPDLPARN 240 AHKFKPKIKP RPRVGNMPAS ASSDVMMEKS VELPTSCSTD FQSFQSTSVL NQSTSLPLPT 300 SEILRKTYMP DKFGNTSSNV SISEDSKSLA AATPSQLDSL NAMLSVDAVH NGTRDWPSTF 360 GKSSGEAADI FSGLESLDDF LTQATTDTGK PALHSFNEKG AEENFVTPVC SSINSFRECD 420 NTQVQRCPTP QDPVTFNEAT DLNESDTHTK NRMSETEEIV DLNPAYPIDD VFDYQSMKSG 480 EDPTSGIPVH EDLTNAADSS TLADLLHAND SREKEVANQR NRDGSDSCSL RKNKRSSISG 540 EEDNGGKTSR QRRKLAACKP KNSSLNEDVE DDNDIDSPYH SNEHELQEND DDYEVDHSSK 600 KKRGSKSSQK KSVAKSGKTS QRRKKADDDV QKTKEPPKKF SHSTRRKKRC VDKALLEIPE 660 DELDLRTLPI KDIILLAEHR ERQAKKDAMT SNMSPSNQSG GDSLHGAGAY NEHEFSGSED 720 GEDPYDDQDN ERIASTSVLY NYQTFMEKTP RGKWSKQDTE LFYEAIRELG TDFSMIQQLF 780 PDKTRRQIKL KYKKEEREHY LRLRDAIHNR AKDHSHYKLL IERLQLASTK TEEVMDLTTG 840 ANEEVVEAAT IKHDADVKQQ EDSPAVQNPE EYDDSEDDSL KWSQYKSLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g01070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520701.1 | 0.0 | uncharacterized protein LOC106777581 | ||||
Refseq | XP_014520702.1 | 0.0 | uncharacterized protein LOC106777581 | ||||
Refseq | XP_014520703.1 | 0.0 | uncharacterized protein LOC106777581 | ||||
Refseq | XP_014520704.1 | 0.0 | uncharacterized protein LOC106777581 | ||||
Refseq | XP_014520705.1 | 0.0 | uncharacterized protein LOC106777581 | ||||
Refseq | XP_022631476.1 | 0.0 | uncharacterized protein LOC106777581 | ||||
TrEMBL | A0A1S3VQP0 | 0.0 | A0A1S3VQP0_VIGRR; uncharacterized protein LOC106777581 | ||||
STRING | XP_007157057.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 1e-47 | MYB_related family protein |