PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g11430.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 899aa    MW: 99102.9 Da    PI: 7.5553
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g11430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18336435198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e+
  Vradi10g11430.1 336 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEG 427
                      99**************************555566778***************9989999999***9.********************766.677 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  Vradi10g11430.1 428 RLVMGFRK 435
                      67777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-20333435IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-30333439IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-22334435No hitNo description
PROSITE profilePS5086311.138336437IPR003340B3 DNA binding domain
SMARTSM010194.4E-21336437IPR003340B3 DNA binding domain
PfamPF023621.5E-15336435IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149582632IPR011124Zinc finger, CW-type
PfamPF074961.3E-12587629IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MASASSSSSK LCFNSDCKEL RPERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA  60
SGWRSCETCR KRVHCGCIVS SHSFMLLDPG GIECYACARK NIIMPSNLPW PQSFSLQNRL  120
SDRLRDLSAK GWNQLAGSGP VPWKQAPSLF NSASSTDLIP DVPSLAELSN SFDKMYCNER  180
LPASALEKKS EDYTGLPVHW NVTICPREMK LMNGMRNDDK ASSCLNMCQQ PSSLKEESST  240
QPFGLPVPNS CQNERNGQLG VTGSHPQQTP PPPGKHFNGT MHLAPDSSGE AQVRNGRPRA  300
DARGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET  360
YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  420
SRLEPEGRLV MGFRKASSAV PSDQDNETNK SGNGFSAHGE VELADPNSWS KVDKSGYIAK  480
EALGSKSLIS RKRKSGILGS KSKRLRIENE DLIELKITWQ EAQGLLRPPP SHIPSIVVIE  540
GFEFEEYEEF WKLCIVATFM LKIILQEAPV LGKPTIFTSD NVGEKIQWAQ CEDCLKWRKL  600
PASALLPSKW TCADNSWDPE RSSCSAAQEL TAEQLENLLP PCNSAIPKKM KAAKQDPDNA  660
EALEGLDTLA NLAILGEGEA LPASAQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC  720
NVCLTVKRRF RTLMLRREKK QSEKEAETTR KKQQQQHSQP LPSSEILLDE DSLPCSNTGD  780
SSPNQNKEGN DGSDDDPNRI KSSASPFKGQ IDLNIQPERE EELSPGSDSG GMMKLLHDAT  840
ERYLKQQTVN SGTGDSAGSQ SQLVGDAMRE DKLSNGVTHG SSSHSTDKEH AQSLSMNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-623144392127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g11430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518411.20.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1S3VJ830.0A0A1S3VJ83_VIGRR; B3 domain-containing protein Os07g0563300 isoform X1
STRINGXP_007148240.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-147HSI2-like 1