PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g06620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 61aa    MW: 6436.25 Da    PI: 7.3561
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g06620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.44.8e-1414061100
           DUF260  61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                      +vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e
  Vradi10g06620.1   1 MVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAE 40 
                      69**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.599141IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-11138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MVYEANARVR DPVYGCVGAI SSLQQQIDVL QTQLALAQAE VAHLRVRQNS GGAGGDRAPW  60
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g06620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-65AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518102.11e-26LOB domain-containing protein 4
RefseqXP_017435904.12e-26PREDICTED: LOB domain-containing protein 4-like
RefseqXP_027931736.11e-26LOB domain-containing protein 4-like
SwissprotQ9SHE95e-19LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0L9VDQ53e-25A0A0L9VDQ5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S4E44e-25A0A0S3S4E4_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VIR33e-25A0A1S3VIR3_VIGRR; LOB domain-containing protein 4
TrEMBLA0A371I1T75e-25A0A371I1T7_MUCPR; LOB domain-containing protein 4 (Fragment)
STRINGLus100406389e-26(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-21LOB domain-containing protein 4