PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g05010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 313aa    MW: 34957.2 Da    PI: 5.9964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g05010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13122173155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i   A++++k+L+
  Vradi10g05010.1 122 QRMTHIAVERNRRKQMNEYLSVLRALMPES---YVQRGDQASIIGGAINFVKELE 173
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.78E-13120177No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.148121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16121185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALEAVVYPQ PQDPFGCAIK DLYSYNNMLE AAAANWGYGD FTLEKEDQAS VTFLDNQTEN  60
YSHGEWNSSP PSLLPHTMNA SNPPSSETSN TQNNLDTSVS TPARPKRRRT KSRKNKEEIE  120
NQRMTHIAVE RNRRKQMNEY LSVLRALMPE SYVQRGDQAS IIGGAINFVK ELEQRLQFLG  180
AQKEKEGKPD VPFSEFFSFP QYSTSASGGC DNSAAMSDQK GEVQSGIADI EVTMVESHAN  240
LKIRSKKRPK QLLKIVSSLH GMRLTILHLN VTTTGEIVLY SLNVKVEEDC KLGSVDEIAA  300
SVYEMLNRIQ QE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122133RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g05010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517676.10.0transcription factor bHLH94
SwissprotQ9C7T47e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3VH460.0A0A1S3VH46_VIGRR; transcription factor bHLH94
STRINGXP_007147072.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]