PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g08640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YC | ||||||||
Protein Properties | Length: 78aa MW: 8179.59 Da PI: 10.073 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.9 | 9.3e-18 | 22 | 66 | 19 | 62 |
NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrs 62 h+lPlarikki+k+ e+vkmis +aP+++skacelf+ +++ r Vradi09g08640.1 22 HSLPLARIKKIMKKsGEHVKMISGDAPIIFSKACELFVGDFAQRG 66 89**********851689********************9988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.47E-12 | 17 | 63 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.2E-18 | 20 | 69 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-12 | 23 | 68 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MKQAGAYSGL LCGGISGRTG LHSLPLARIK KIMKKSGEHV KMISGDAPII FSKACELFVG 60 DFAQRGLNIG SYSHESI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g08640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-79 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237975.1 | 2e-33 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A151RNI3 | 5e-32 | A0A151RNI3_CAJCA; Nuclear transcription factor Y subunit C-1 | ||||
STRING | GLYMA13G35980.1 | 6e-32 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 5e-15 | nuclear factor Y, subunit C3 |