PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g06460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 306aa    MW: 35116.8 Da    PI: 4.9856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g06460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-08178219955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r RR++i ++ ++L +l+P       +K++ ae+L  A +Y+k+Lq
  Vradi09g06460.1 178 ARERRRKISEKTQQLGKLVPGG-----PKMNTAEMLHAAAKYVKYLQ 219
                      599*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.532169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-12170229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-8175223No hitNo description
Gene3DG3DSA:4.10.280.102.3E-11176227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6178219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMAPGTYFNW DTVQIPSSET NTFHMLEEEV ATPNLQHLFS YYDQNVFLPT ASFENYIDPT  60
RGFLHPSDID TSLYDPSISF AHSNIFPTSQ QDTLLPSPKR QKCCFESEVQ KLPAQTVLPC  120
SLYTDEFVVP YDNFYSSQIE EQPQQIAVQF SQFDSTCEDL KCLKKETEKT ISPQSLAARE  180
RRRKISEKTQ QLGKLVPGGP KMNTAEMLHA AAKYVKYLQA QVKLLELTKS LFWQEDNAET  240
PSEMLQTLVV SSFVQEKLYT EEMCFVPKET VIRMINHEDV QSRHTILRDL KQLIGTKIAN  300
KEKQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g06460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441310.11e-156PREDICTED: transcription factor bHLH53-like
TrEMBLA0A0L9VTW61e-154A0A0L9VTW6_PHAAN; Uncharacterized protein
STRINGGLYMA08G17747.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-30bHLH family protein