PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g17110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 23809.4 Da PI: 6.9697 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136 | 1.4e-42 | 66 | 165 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+l Vradi08g17110.1 66 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQL 159 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Vradi08g17110.1 160 AKAQAE 165 *99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.964 | 65 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-43 | 66 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MYYKLKTTTT TASSPIPIHL PTMLSNSPPS SSSSPPSHSP TPFPSPSQGS PAPAPPSPPP 60 PVVVSPCAAC KILRRRCVEK CVLAPYFPPT DPLKFTIAHR VFGASNIIKF LQELPESQRA 120 DAVSSMVYEA NARIRDPVYG CAGAICQLQK QVSELQAQLA KAQAEVVNMQ CQQANLVALI 180 CMEMSESQEQ HMVQPQAHID MSCFIEDNSF GSAWEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-43 | 57 | 173 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-43 | 57 | 173 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g17110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099113 | 0.0 | BT099113.1 Soybean clone JCVI-FLGm-13B15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512819.1 | 1e-160 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-76 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1S3V3U5 | 1e-158 | A0A1S3V3U5_VIGRR; LOB domain-containing protein 1 | ||||
STRING | GLYMA20G31780.1 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-65 | LOB domain-containing protein 1 |